Site-directed fluorescence approaches to monitor the structural dynamics of proteins using intrinsic Trp and labeled with extrinsic fluorophores

被引:16
作者
Brahma, Rupasree [1 ]
Das, Anindita [1 ]
Raghuraman, H. [1 ]
机构
[1] CI Homi Bhabha Natl Inst, Saha Inst Nucl Phys, Crystallog & Mol Biol Div, 1-AF Bidhannagar, Kolkata 700064, India
来源
STAR PROTOCOLS | 2022年 / 3卷 / 01期
基金
英国惠康基金;
关键词
IONIC-STRENGTH; MELITTIN; ORGANIZATION; CHOLESTEROL; TRANSITIONS; MECHANISMS; CHANNEL; CONFORMATIONS; MEMBRANES; PEPTIDE;
D O I
10.1016/j.xpro.2022.101200
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
Comprehensive understanding of a protein's function depends on having reliable, sophisticated tools to study protein structural dynamics in physiologically-relevant conditions. Here, we present an effective, robust step- by- step protocol to monitor the structural dynamics ( including hydration dynamics) of a protein utilizing various site-directed fluorescence (SDFL) approaches. This protocol should be widely applicable for studying soluble proteins, intrinsically-disordered proteins, and membrane proteins. For complete details on the use and execution of this protocol, please refer to Das et al. (2020), Das and Raghuraman (2021), and Chatterjee et al. (2021).
引用
收藏
页数:30
相关论文
共 68 条
[1]   Detergent selection for enhanced extraction of membrane proteins [J].
Arachea, Buenafe T. ;
Sun, Zhen ;
Potente, Nina ;
Malik, Radhika ;
Isailovic, Dragan ;
Viola, Ronald E. .
PROTEIN EXPRESSION AND PURIFICATION, 2012, 86 (01) :12-20
[3]   Water Determines the Structure and Dynamics of Proteins [J].
Bellissent-Funel, Marie-Claire ;
Hassanali, Ali ;
Havenith, Martina ;
Henchman, Richard ;
Pohl, Peter ;
Sterpone, Fabio ;
van der Spoel, David ;
Xu, Yao ;
Garcia, Angel E. .
CHEMICAL REVIEWS, 2016, 116 (13) :7673-7697
[4]   Fluorescence Lifetime Measurements and Biological Imaging [J].
Berezin, Mikhail Y. ;
Achilefu, Samuel .
CHEMICAL REVIEWS, 2010, 110 (05) :2641-2684
[5]   Probing conformational transitions of PIN1 from L. major during chemical and thermal denaturation [J].
Biswas, Gargi ;
Ghosh, Semanti ;
Raghuraman, H. ;
Banerjee, Rahul .
INTERNATIONAL JOURNAL OF BIOLOGICAL MACROMOLECULES, 2020, 154 (154) :904-915
[6]   Novel insights in linking solvent relaxation dynamics and protein conformations utilizing red edge excitation shift approach [J].
Brahma, Rupasree ;
Raghuraman, H. .
EMERGING TOPICS IN LIFE SCIENCES, 2021, 5 (01) :89-101
[7]  
Braman J, 1996, Methods Mol Biol, V57, P31
[8]  
BROCHON JC, 1994, METHOD ENZYMOL, V240, P262
[9]  
Callis PR, 2014, METHODS MOL BIOL, V1076, P171, DOI 10.1007/978-1-62703-649-8_8
[10]   Gating-related Structural Dynamics of the MgtE Magnesium Channel in Membrane-Mimetics Utilizing Site-Directed Tryptophan Fluorescence [J].
Chatterjee, Satyaki ;
Brahma, Rupasree ;
Raghuraman, H. .
JOURNAL OF MOLECULAR BIOLOGY, 2021, 433 (17)