Aviram-Ratner rectifying mechanism for DNA base-pair sequencing through graphene nanogaps

被引:12
作者
Agapito, Luis A. [1 ,2 ]
Gayles, Jacob [1 ,2 ,3 ]
Wolowiec, Christian [1 ,2 ,4 ]
Kioussis, Nicholas [1 ,2 ]
机构
[1] Calif State Univ Northridge, Dept Phys, Northridge, CA 91330 USA
[2] Calif State Univ Northridge, WM Keck Computat Mat Theory Ctr, Northridge, CA 91330 USA
[3] Texas A&M Univ, Dept Phys, College Stn, TX 77843 USA
[4] Univ Calif San Diego, Dept Phys, La Jolla, CA 92093 USA
关键词
TRANSVERSE ELECTRONIC TRANSPORT; SCANNING TUNNELING MICROSCOPE; MOLECULES; NANOPORE; NUCLEOTIDES; PSEUDOPOTENTIALS; CONDUCTANCE; ENVIRONMENT; COLLOQUIUM; MEMBRANES;
D O I
10.1088/0957-4484/23/13/135202
中图分类号
TB3 [工程材料学];
学科分类号
0805 ; 080502 ;
摘要
We demonstrate that biological molecules such as Watson-Crick DNA base pairs can behave as biological Aviram-Ratner electrical rectifiers because of the spatial separation and weak hydrogen bonding between the nucleobases. We have performed a parallel computational implementation of the ab initio non-equilibrium Green's function (NEGF) theory to determine the electrical response of graphene-base-pair-graphene junctions. The results show an asymmetric (rectifying) current-voltage response for the cytosine-guanine base pair adsorbed on a graphene nanogap. In sharp contrast we find a symmetric response for the thymine-adenine case. We propose applying the asymmetry of the current-voltage response as a sensing criterion to the technological challenge of rapid DNA sequencing via graphene nanogaps.
引用
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页数:11
相关论文
共 53 条
[1]   Ab initio calculation of a graphene-ribbon-based molecular switch [J].
Agapito, Luis A. ;
Cheng, Hai-Ping .
JOURNAL OF PHYSICAL CHEMISTRY C, 2007, 111 (38) :14266-14273
[2]   "Seamless" Graphene Interconnects for the Prospect of All-Carbon Spin-Polarized Field-Effect Transistors [J].
Agapito, Luis A. ;
Kioussis, Nicholas .
JOURNAL OF PHYSICAL CHEMISTRY C, 2011, 115 (06) :2874-2879
[3]   First-principles determination of the effects of intermolecular interactions on the electronic transport through molecular monolayers [J].
Agapito, Luis A. ;
Cao, Chao ;
Cheng, Hai-Ping .
PHYSICAL REVIEW B, 2008, 78 (15)
[4]   Microsecond time-scale discrimination among polycytidylic acid, polyadenylic acid, and polyuridylic acid as homopolymers or as segments within single RNA molecules [J].
Akeson, M ;
Branton, D ;
Kasianowicz, JJ ;
Brandin, E ;
Deamer, DW .
BIOPHYSICAL JOURNAL, 1999, 77 (06) :3227-3233
[5]   Structures and interaction energies of stacked graphene-nucleobase complexes [J].
Antony, Jens ;
Grimme, Stefan .
PHYSICAL CHEMISTRY CHEMICAL PHYSICS, 2008, 10 (19) :2722-2729
[6]   MOLECULAR RECTIFIERS [J].
AVIRAM, A ;
RATNER, MA .
CHEMICAL PHYSICS LETTERS, 1974, 29 (02) :277-283
[7]   Focused ion beam sculpted membranes for nanoscience tooling [J].
Biance, AL ;
Gierak, J ;
Bourhis, É ;
Madouri, A ;
Lafosse, X ;
Patriarche, G ;
Oukhaled, G ;
Ulysse, C ;
Galas, JC ;
Chen, Y ;
Auvray, L .
MICROELECTRONIC ENGINEERING, 2006, 83 (4-9) :1474-1477
[8]   Advances in sequencing technology [J].
Chan, EY .
MUTATION RESEARCH-FUNDAMENTAL AND MOLECULAR MECHANISMS OF MUTAGENESIS, 2005, 573 (1-2) :13-40
[9]   The origin of dips for the graphene-based DNA sequencing device [J].
Cho, Yeonchoo ;
Min, Seung Kyu ;
Kim, Woo Youn ;
Kim, Kwang S. .
PHYSICAL CHEMISTRY CHEMICAL PHYSICS, 2011, 13 (32) :14293-14296
[10]   Characterization of nucleic acids by nanopore analysis [J].
Deamer, DW ;
Branton, D .
ACCOUNTS OF CHEMICAL RESEARCH, 2002, 35 (10) :817-825