Population genetics of cucumber mosaic virus infecting medicinal, aromatic and ornamental plants from northern Italy

被引:22
作者
Davino, Salvatore [2 ,3 ]
Panno, Stefano [2 ]
Rangel, Ezequiel A. [1 ,4 ]
Davino, Mario [5 ]
Bellardi, Maria Grazia [6 ]
Rubio, Luis [1 ]
机构
[1] Inst Valenciano Invest Agr, Valencia 46113, Spain
[2] Univ Palermo, Dipartimento DEMETRA, I-90128 Palermo, Italy
[3] Ist EuroMediterraneo Sci & Tecnol, Palermo, Italy
[4] Inst Nacl Invest Agr, CENIAP, Unidad Protecc Vegetal, Maracay 2101, Aragua, Venezuela
[5] Univ Catania, Dipartimento DISPA, Sez Patol Vegetale & Genet Agr, I-95123 Catania, Italy
[6] Univ Bologna, Dipartimento Sci & Tecnol Agroambientali DiSTA, I-40127 Bologna, Italy
关键词
CITRUS-TRISTEZA VIRUS; MOLECULAR EPIDEMIOLOGY; COAT PROTEIN; CALIFORNIA; TRANSMISSION; EVOLUTION; MUTATION; NUMBER; RATES;
D O I
10.1007/s00705-011-1216-4
中图分类号
Q93 [微生物学];
学科分类号
071005 ; 100705 ;
摘要
The genetic variation and evolution of cucumber mosaic virus (CMV) from aromatic, medicinal and ornamental plants in northern Italy was studied by sequence analysis of the movement protein gene and comparison with equivalent sequences of isolates from other countries. Comparison of nonsynonymous and synonymous substitutions suggested that 30% of amino acid sites were under negative selection and only one was under positive selection. Phylogenetic, nucleotide diversity and genetic differentiation analyses suggested that long-distance migration plays a role in the evolution and determination of the genetic structure and diversity of CMV in northern Italy and other areas.
引用
收藏
页码:739 / 745
页数:7
相关论文
共 41 条
[21]   Clustal W and clustal X version 2.0 [J].
Larkin, M. A. ;
Blackshields, G. ;
Brown, N. P. ;
Chenna, R. ;
McGettigan, P. A. ;
McWilliam, H. ;
Valentin, F. ;
Wallace, I. M. ;
Wilm, A. ;
Lopez, R. ;
Thompson, J. D. ;
Gibson, T. J. ;
Higgins, D. G. .
BIOINFORMATICS, 2007, 23 (21) :2947-2948
[22]   DnaSP v5: a software for comprehensive analysis of DNA polymorphism data [J].
Librado, P. ;
Rozas, J. .
BIOINFORMATICS, 2009, 25 (11) :1451-1452
[23]   Molecular population genetics of Cucumber mosaic virus in California:: Evidence for founder effects and reassortment [J].
Lin, HX ;
Rubio, L ;
Smythe, AB ;
Falk, BW .
JOURNAL OF VIROLOGY, 2004, 78 (12) :6666-6675
[24]   Genetic diversity and biological variation among California isolates of Cucumber mosaic virus [J].
Lin, HX ;
Rubio, L ;
Smythe, A ;
Jiminez, M ;
Falk, BW .
JOURNAL OF GENERAL VIROLOGY, 2003, 84 :249-258
[25]   Evolutionary analysis of tomato Sw-5 resistance-breaking isolates of Tomato spotted wilt virus [J].
Lopez, Carmelo ;
Aramburu, Jose ;
Galipienso, Luis ;
Soler, Salvador ;
Nuez, Fernando ;
Rubio, Luis .
JOURNAL OF GENERAL VIROLOGY, 2011, 92 :210-215
[26]   Genetic variation of populations of Citrus psorosis virus [J].
Martin, Susana ;
Laura Garcia, Maria ;
Troisi, Antonella ;
Rubio, Luis ;
Legarreta, Gonzalo ;
Grau, Oscar ;
Alioto, Daniela ;
Moreno, Pedro ;
Guerri, Jose .
JOURNAL OF GENERAL VIROLOGY, 2006, 87 :3097-3102
[27]   The population genetics and evolutionary epidemiology of RNA viruses [J].
Moya, A ;
Holmes, EC ;
González-Candelas, F .
NATURE REVIEWS MICROBIOLOGY, 2004, 2 (04) :279-288
[28]  
Nei M., 2000, MOL EVOLUTION PHYLOG
[29]   Cucumoviruses [J].
Palukaitis, P ;
García-Arenal, F .
ADVANCES IN VIRUS RESEARCH, VOL 62, 2003, 62 :241-323
[30]   Cucumber Mosaic Virus [J].
Jacquemond, Mireille .
VIRUSES AND VIRUS DISEASES OF VEGETABLES IN THE MEDITERRANEAN BASIN, 2012, 84 :439-504