Systematic pan-cancer landscape identifies CARM1 as a potential prognostic and immunological biomarker

被引:11
作者
Qiu, Yingqi [1 ]
Wang, Hao [1 ]
Liao, Peiyun [1 ]
Xu, Binyan [1 ]
Hu, Rong [1 ]
Yang, Yulu [1 ]
Li, Yuhua [1 ,2 ]
机构
[1] Southern Med Univ, Zhujiang Hosp, Dept Hematol, 253 GongyeDadaoZhong, Guangzhou 510280, Guangdong, Peoples R China
[2] Guangzhou Regenerat Med & Hlth Guangdong Lab, Bioland Lab, Guangzhou 510005, Guangdong, Peoples R China
来源
BMC GENOMIC DATA | 2022年 / 23卷 / 01期
关键词
CARM1; Pan-cancer analysis; Prognosis; Immune; Tumor microenvironment; ESTROGEN-RECEPTOR-ALPHA; EXPRESSION; METHYLATION; COACTIVATOR; INHIBITION; METABOLISM; ACTIVATION; COMPLEX;
D O I
10.1186/s12863-021-01022-w
中图分类号
Q3 [遗传学];
学科分类号
071007 ; 090102 ;
摘要
Background Belonging to the protein arginine methyltransferase (PRMT) family, the enzyme encoded by coactivator associated arginine methyltransferase 1 (CARM1) catalyzes the methylation of protein arginine residues, especially acts on histones and other chromatin related proteins, which is essential in regulating gene expression. Beyond its well-established involvement in the regulation of transcription, recent studies have revealed a novel role of CARM1 in tumorigenesis and development, but there is still a lack of systematic understanding of CARM1 in human cancers. An integrated analysis of CARM1 in pan-cancer may contribute to further explore its prognostic value and potential immunological function in tumor therapy. Results Based on systematic analysis of data in multiple databases, we firstly verified that CARM1 is highly expressed in most tumors compared with corresponding normal tissues, and is bound up with poor prognosis in some tumors. Subsequently, relevance between CARM1 expression level and tumor immune microenvironment is analyzed from the perspectives of tumor mutation burden, microsatellite instability, mismatch repair genes, methyltransferases genes, immune checkpoint genes and immune cells infiltration, indicating a potential relationship between CARM1 expression and tumor microenvironment. A gene enrichment analysis followed shortly, which implied that the role of CARM1 in tumor pathogenesis may be related to transcriptional imbalance and viral carcinogenesis. Conclusions Our first comprehensive bioinformatics analysis provides a broad molecular perspective on the role of CARM1 in various tumors, highlights its value in clinical prognosis and potential association with tumor immune microenvironment, which may furnish an immune based antitumor strategy to provide a reference for more accurate and personalized immunotherapy in the future.
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页数:21
相关论文
共 39 条
[1]   LSD1 engages a corepressor complex for the activation of the estrogen receptor α by estrogen and cAMP [J].
Bennesch, Marcela A. ;
Segala, Gregory ;
Wider, Diana ;
Picard, Didier .
NUCLEIC ACIDS RESEARCH, 2016, 44 (18) :8655-8670
[2]   A chemical probe of CARM1 alters epigenetic plasticity against breast cancer cell invasion [J].
Cai, Xiao-Chuan ;
Zhang, Tuo ;
Kim, Eui-jun ;
Jiang, Ming ;
Wang, Ke ;
Wang, Junyi ;
Chen, Shi ;
Zhang, Nawei ;
Wu, Hong ;
Li, Fengling ;
dela Sena, Carlo C. ;
Zeng, Hong ;
Vivcharuk, Victor ;
Niu, Xiang ;
Zheng, Weihong ;
Lee, Jonghan P. ;
Chen, Yuling ;
Barsyte, Dalia ;
Szewczyk, Magda ;
Hajian, Taraneh ;
Ibanez, Glorymar ;
Dong, Aiping ;
Dombrovski, Ludmila ;
Zhang, Zhenyu ;
Deng, Haiteng ;
Min, Jinrong ;
Arrowsmith, Cheryl H. ;
Mazutis, Linas ;
Shi, Lei ;
Vedadi, Masoud ;
Brown, Peter J. ;
Xiang, Jenny ;
Qin, Li-Xuan ;
Xu, Wei ;
Luo, Minkui .
ELIFE, 2019, 8
[3]   The cBio Cancer Genomics Portal: An Open Platform for Exploring Multidimensional Cancer Genomics Data [J].
Cerami, Ethan ;
Gao, Jianjiong ;
Dogrusoz, Ugur ;
Gross, Benjamin E. ;
Sumer, Selcuk Onur ;
Aksoy, Buelent Arman ;
Jacobsen, Anders ;
Byrne, Caitlin J. ;
Heuer, Michael L. ;
Larsson, Erik ;
Antipin, Yevgeniy ;
Reva, Boris ;
Goldberg, Arthur P. ;
Sander, Chris ;
Schultz, Nikolaus .
CANCER DISCOVERY, 2012, 2 (05) :401-404
[4]   Regulation of transcription by a protein methyltransferase [J].
Chen, DG ;
Ma, H ;
Hong, H ;
Koh, SS ;
Huang, SM ;
Schurter, BT ;
Aswad, DW ;
Stallcup, MR .
SCIENCE, 1999, 284 (5423) :2174-2177
[5]   Expression and sub-cellular localization of an epigenetic regulator, co-activator arginine methyltransferase 1 (CARM1), is associated with specific breast cancer subtypes and ethnicity [J].
Davis, Melissa B. ;
Liu, Xinyu ;
Wang, Shiyao ;
Reeves, Jaxk ;
Khramtsov, Andrey ;
Huo, Dezheng ;
Olopade, Olufunmilayo I. .
MOLECULAR CANCER, 2013, 12
[6]   Immune Infiltration in Human Cancer: Prognostic Significance and Disease Control [J].
Fridman, Wolf H. ;
Galon, Jerome ;
Dieu-Nosjean, Marie-Caroline ;
Cremer, Isabelle ;
Fisson, Sylvain ;
Damotte, Diane ;
Pages, Franck ;
Tartour, Eric ;
Sautes-Fridman, Catherine .
CANCER IMMUNOLOGY AND IMMUNOTHERAPY, 2011, 344 :1-24
[7]  
He X, 2020, CELL RES, V30, P660, DOI [10.19678/j.issn.1000-3428.0058876, 10.1038/s41422-020-0343-4]
[8]   Aberrant expression of CARM1, a transcriptional coactivator of androgen receptor, in the development of prostate carcinoma and androgen-independent status [J].
Hong, H ;
Kao, CH ;
Jeng, MH ;
Eble, JN ;
Koch, MO ;
Gardner, TA ;
Zhang, SB ;
Li, L ;
Pan, CX ;
Hu, ZQ ;
MacLennan, GT ;
Cheng, L .
CANCER, 2004, 101 (01) :83-89
[9]   EZH2 Inhibition Sensitizes CARM1-High, Homologous Recombination Proficient Ovarian Cancers to PARP Inhibition [J].
Karakashev, Sergey ;
Fukumoto, Takeshi ;
Zhao, Bo ;
Lin, Jianhuang ;
Wu, Shuai ;
Fatkhutdinov, Nail ;
Park, Pyoung-Hwa ;
Semenova, Galina ;
Jean, Stephanie ;
Cadungog, Mark G. ;
Borowsky, Mark E. ;
Kossenkov, Andrew V. ;
Liu, Qin ;
Zhang, Rugang .
CANCER CELL, 2020, 37 (02) :157-+
[10]   CARM1 Inhibition Enables Immunotherapy of Resistant Tumors by Dual Action on Tumor Cells and T Cells [J].
Kumar, Sushil ;
Zeng, Zexian ;
Bagati, Archis ;
Tay, Rong En ;
Sanz, Lionel A. ;
Hartono, Stella R. ;
Ito, Yoshinaga ;
Abderazzaq, Fieda ;
Hatchi, Elodie ;
Jiang, Peng ;
Cartwright, Adam N. R. ;
Olawoyin, Olamide ;
Mathewson, Nathan D. ;
Pyrdol, Jason W. ;
Li, Mamie Z. ;
Doench, John G. ;
Booker, Matthew A. ;
Tolstorukov, Michael Y. ;
Elledge, Stephen J. ;
Chedin, Frederic ;
Liu, X. Shirley ;
Wucherpfennig, Kai W. .
CANCER DISCOVERY, 2021, 11 (08) :2050-2071