A Machine Learning Approach to Investigate the Uncertainty of Tissue-Level Injury Metrics for Cerebral Contusion

被引:6
作者
Menichetti, Andrea [1 ]
Bartsoen, Laura [1 ]
Depreitere, Bart [2 ]
Vander Sloten, Jos [1 ]
Famaey, Nele [1 ]
机构
[1] Katholieke Univ Leuven, Biomech Sect, Dept Mech Engn, Leuven, Belgium
[2] Univ Hosp Leuven, Neurosurg, Leuven, Belgium
关键词
brain biomechanics; cerebral contusion; finite element modeling; tissue-level injury criteria; machine learning; controlled cortical impact; traumatic brain injury; CONTROLLED CORTICAL IMPACT; FINITE-ELEMENT-ANALYSIS; TRAUMATIC BRAIN-INJURY; HEAD-INJURY; IN-VIVO; MODELS; STRAIN; PREDICTION; INDENTATION; PATHOPHYSIOLOGY;
D O I
10.3389/fbioe.2021.714128
中图分类号
Q81 [生物工程学(生物技术)]; Q93 [微生物学];
学科分类号
071005 ; 0836 ; 090102 ; 100705 ;
摘要
Controlled cortical impact (CCI) on porcine brain is often utilized to investigate the pathophysiology and functional outcome of focal traumatic brain injury (TBI), such as cerebral contusion (CC). Using a finite element (FE) model of the porcine brain, the localized brain strain and strain rate resulting from CCI can be computed and compared to the experimentally assessed cortical lesion. This way, tissue-level injury metrics and corresponding thresholds specific for CC can be established. However, the variability and uncertainty associated with the CCI experimental parameters contribute to the uncertainty of the provoked cortical lesion and, in turn, of the predicted injury metrics. Uncertainty quantification via probabilistic methods (Monte Carlo simulation, MCS) requires a large number of FE simulations, which results in a time-consuming process. Following the recent success of machine learning (ML) in TBI biomechanical modeling, we developed an artificial neural network as surrogate of the FE porcine brain model to predict the brain strain and the strain rate in a computationally efficient way. We assessed the effect of several experimental and modeling parameters on four FE-derived CC injury metrics (maximum principal strain, maximum principal strain rate, product of maximum principal strain and strain rate, and maximum shear strain). Next, we compared the in silico brain mechanical response with cortical damage data from in vivo CCI experiments on pig brains to evaluate the predictive performance of the CC injury metrics. Our ML surrogate was capable of rapidly predicting the outcome of the FE porcine brain undergoing CCI. The now computationally efficient MCS showed that depth and velocity of indentation were the most influential parameters for the strain and the strain rate-based injury metrics, respectively. The sensitivity analysis and comparison with the cortical damage experimental data indicate a better performance of maximum principal strain and maximum shear strain as tissue-level injury metrics for CC. These results provide guidelines to optimize the design of CCI tests and bring new insights to the understanding of the mechanical response of brain tissue to focal traumatic brain injury. Our findings also highlight the potential of using ML for computationally efficient TBI biomechanics investigations.
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页数:17
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共 100 条
[1]  
Abadi M, 2016, PROCEEDINGS OF OSDI'16: 12TH USENIX SYMPOSIUM ON OPERATING SYSTEMS DESIGN AND IMPLEMENTATION, P265
[2]   The natural history of brain contusion: an analysis of radiological and clinical progression - Clinical article [J].
Alahmadi, Hussein ;
Vachhrajani, Shobhan ;
Cusimano, Michael D. .
JOURNAL OF NEUROSURGERY, 2010, 112 (05) :1139-1145
[3]   Moderate controlled cortical contusion in pigs: Effects on multi-parametric neuromonitoring and clinical relevance [J].
Alessandri, B ;
Heimann, A ;
Filippi, R ;
Kopacz, L ;
Kempski, O .
JOURNAL OF NEUROTRAUMA, 2003, 20 (12) :1293-1305
[4]   Predicting Concussion Outcome by Integrating Finite Element Modeling and Network Analysis [J].
Anderson, Erin D. ;
Giudice, J. Sebastian ;
Wu, Taotao ;
Panzer, Matthew B. ;
Meaney, David F. .
FRONTIERS IN BIOENGINEERING AND BIOTECHNOLOGY, 2020, 8
[5]   Controlled Cortical Impact Severity Results in Graded Cellular, Tissue, and Functional Responses in a Piglet Traumatic Brain Injury Model [J].
Baker, Emily W. ;
Kinder, Holly A. ;
Hutcheson, Jessica M. ;
Duberstein, Kylee Jo J. ;
Platt, Simon R. ;
Howerth, Elizabeth W. ;
West, Franklin D. .
JOURNAL OF NEUROTRAUMA, 2019, 36 (01) :61-73
[6]   Computationally Efficient Optimization Method to Quantify the Required Surgical Accuracy for a Ligament Balanced TKA [J].
Bartsoen, Laura ;
Faes, Matthias G. R. ;
Wesseling, Mariska ;
Wirix-Speetjens, Roel ;
Moens, David ;
Jonkers, Ilse ;
Sloten, Jos Vander .
IEEE TRANSACTIONS ON BIOMEDICAL ENGINEERING, 2021, 68 (11) :3273-3280
[7]   Variance reduction in estimating classification error using sparse datasets [J].
Beleites, C ;
Baumgartner, R ;
Bowman, C ;
Somorjai, R ;
Steiner, G ;
Salzer, R ;
Sowa, MG .
CHEMOMETRICS AND INTELLIGENT LABORATORY SYSTEMS, 2005, 79 (1-2) :91-100
[8]   A new uncertainty importance measure [J].
Borgonovo, E. .
RELIABILITY ENGINEERING & SYSTEM SAFETY, 2007, 92 (06) :771-784
[9]   Fifty Shades of Brain: A Review on the Mechanical Testing and Modeling of Brain Tissue [J].
Budday, Silvia ;
Ovaert, Timothy C. ;
Holzapfel, Gerhard A. ;
Steinmann, Paul ;
Kuhl, Ellen .
ARCHIVES OF COMPUTATIONAL METHODS IN ENGINEERING, 2020, 27 (04) :1187-1230
[10]   Surrogate models based on machine learning methods for parameter estimation of left ventricular myocardium [J].
Cai, Li ;
Ren, Lei ;
Wang, Yongheng ;
Xie, Wenxian ;
Zhu, Guangyu ;
Gao, Hao .
ROYAL SOCIETY OPEN SCIENCE, 2021, 8 (01)