Age-dependent instability of mature neuronal fate in induced neurons from Alzheimer's patients

被引:148
作者
Mertens, Jerome [1 ,2 ]
Herdy, Joseph R. [1 ,2 ,3 ]
Traxler, Larissa [1 ,2 ]
Schafer, Simon T. [1 ]
Schlachetzki, Johannes C. M. [4 ]
Bohnke, Lena [1 ,2 ]
Reid, Dylan A. [1 ]
Lee, Hyungjun [1 ]
Zangwill, Dina [1 ]
Fernandes, Diana P. [1 ]
Agarwal, Ravi K. [1 ]
Lucciola, Raffaella [1 ]
Zhou-Yang, Lucia [2 ]
Karbacher, Lukas [2 ]
Edenhofer, Frank [5 ,6 ]
Stern, Shani [1 ,7 ]
Horvath, Steve [8 ]
Paquola, Apua C. M. [1 ,9 ]
Glass, Christopher K. [4 ]
Yuan, Shauna H. [3 ,10 ]
Ku, Manching [11 ]
Szucs, Attila [12 ]
Goldstein, Lawrence S. B. [3 ,4 ,13 ]
Galasko, Douglas [3 ]
Gage, Fred H. [1 ]
机构
[1] Salk Inst Biol Studies, Lab Genet, 10010 N Torrey Pines Rd, La Jolla, CA 92037 USA
[2] Leopold Franzens Univ Innsbruck, Neural Aging Lab, Inst Mol Biol, CMBI, Tyrol, Austria
[3] Univ Calif San Diego, Dept Neurosci, La Jolla, CA 92093 USA
[4] Univ Calif San Diego, Dept Cellular & Mol Med, La Jolla, CA 92093 USA
[5] Leopold Franzens Univ Innsbruck, Dept Genom Stem Cells & Regenerat Med, Inst Mol Biol, CMBI, Tyrol, Austria
[6] Leopold Franzens Univ Innsbruck, CMBI, Tyrol, Austria
[7] Univ Haifa, Fac Nat Sci, Sagol Dept Neurobiol, Haifa, Israel
[8] Univ Calif Los Angeles, Dept Human Genet, Dept Biostat, Los Angeles, CA USA
[9] Lieber Inst Brain Dev, Baltimore, MD USA
[10] Univ Minnesota Twin Cities, Dept Neurol, Minneapolis, MN USA
[11] Univ Freiburg, Fac Med, Dept Pediat & Adolescent Med, Div Pediat Hematol & Oncol,Med Ctr, Freiburg, Germany
[12] Eotvos Lorand Univ, Neuronal Cell Biol Res Grp, Budapest, Hungary
[13] Sanford Consortium Regenerat Med, La Jolla, CA USA
基金
奥地利科学基金会; 欧盟地平线“2020”;
关键词
REPROGRAMMED HUMAN NEURONS; GAMMA-SECRETASE ACTIVITY; CELL-CYCLE ACTIVATION; EPIGENETIC DRIFT; DNA-REPLICATION; OPEN CHROMATIN; DISEASE; GENE; SIGNATURES; GENERATION;
D O I
10.1016/j.stem.2021.04.004
中图分类号
Q813 [细胞工程];
学科分类号
摘要
Sporadic Alzheimer's disease (AD) exclusively affects elderly people. Using direct conversion of AD patient fibroblasts into induced neurons (iNs), we generated an age-equivalent neuronal model. AD patient-derived iNs exhibit strong neuronal transcriptome signatures characterized by downregulation of mature neuronal properties and upregulation of immature and progenitor-like signaling pathways. Mapping iNs to longitudinal neuronal differentiation trajectory data demonstrated that AD iNs reflect a hypo-mature neuronal identity characterized by markers of stress, cell cycle, and de-differentiation. Epigenetic landscape profiling revealed an underlying aberrant neuronal state that shares similarities with malignant transformation and age-dependent epigenetic erosion. To probe for the involvement of aging, we generated rejuvenated iPSC-derived neurons that showed no significant disease-related transcriptome signatures, a feature that is consistent with epigenetic clock and brain ontogenesis mapping, which indicate that fibroblast-derived iNs more closely reflect old adult brain stages. Our findings identify AD-related neuronal changes as age-dependent cellular programs that impair neuronal identity.
引用
收藏
页码:1533 / +
页数:22
相关论文
共 106 条
[1]   Human whole genome genotype and transcriptome data for Alzheimer's and other neurodegenerative diseases [J].
Allen, Mariet ;
Carrasquillo, Minerva M. ;
Funk, Cory ;
Heavner, Benjamin D. ;
Zou, Fanggeng ;
Younkin, Curtis S. ;
Burgess, Jeremy D. ;
Chai, High-Seng ;
Crook, Julia ;
Eddy, James A. ;
Li, Hongdong ;
Logsdon, Ben ;
Peters, Mette A. ;
Dang, Kristen K. ;
Wang, Xue ;
Serie, Daniel ;
Wang, Chen ;
Thuy Nguyen ;
Lincoln, Sarah ;
Malphrus, Kimberly ;
Bisceglio, Gina ;
Li, Ma ;
Golde, Todd E. ;
Mangravite, Lara M. ;
Asmann, Yan ;
Price, Nathan D. ;
Petersen, Ronald C. ;
Graff-Radford, Neill R. ;
Dickson, Dennis W. ;
Younkin, Steven G. ;
Ertekin-Taner, Nilufer .
SCIENTIFIC DATA, 2016, 3
[3]   Tau gene alternative splicing: expression patterns, regulation and modulation of function in normal brain and neurodegenerative diseases [J].
Andreadis, A .
BIOCHIMICA ET BIOPHYSICA ACTA-MOLECULAR BASIS OF DISEASE, 2005, 1739 (2-3) :91-103
[4]   Whole transcriptome profiling of Late-Onset Alzheimer's Disease patients provides insights into the molecular changes involved in the disease [J].
Annese, Anita ;
Manzari, Caterina ;
Lionetti, Claudia ;
Picardi, Ernesto ;
Horner, David S. ;
Chiara, Matteo ;
Caratozzolo, Mariano Francesco ;
Tullo, Apollonia ;
Fosso, Bruno ;
Pesole, Graziano ;
D'Erchia, Anna Maria .
SCIENTIFIC REPORTS, 2018, 8
[5]   Modeling motor neuron disease: the matter of time [J].
Arbab, Mandana ;
Baars, Susanne ;
Geijsen, Niels .
TRENDS IN NEUROSCIENCES, 2014, 37 (11) :642-652
[6]  
Arendt T, 2000, ANN NY ACAD SCI, V920, P249
[7]   Cell Cycle Activation and Aneuploid Neurons in Alzheimer's Disease [J].
Arendt, Thomas .
MOLECULAR NEUROBIOLOGY, 2012, 46 (01) :125-135
[8]   Epigenetic regulation of brain region-specific microglia clearance activity [J].
Ayata, Pinar ;
Badimon, Ana ;
Strasburger, Hayley J. ;
Duff, Mary Kaye ;
Montgomery, Sarah E. ;
Loh, Yong-Hwee E. ;
Ebert, Anja ;
Pimenova, Anna A. ;
Ramirez, Brianna R. ;
Chan, Andrew T. ;
Sullivan, Josefa M. ;
Purushothaman, Immanuel ;
Scarpa, Joseph R. ;
Goate, Alison M. ;
Busslinger, Meinrad ;
Shen, Li ;
Losic, Bojan ;
Schaefer, Anne .
NATURE NEUROSCIENCE, 2018, 21 (08) :1049-+
[9]   Adult neuron survival strategies - Slamming on the brakes [J].
Benn, SC ;
Woolf, CJ .
NATURE REVIEWS NEUROSCIENCE, 2004, 5 (09) :686-700
[10]   Oncogenic pathway signatures in human cancers as a guide to targeted therapies [J].
Bild, AH ;
Yao, G ;
Chang, JT ;
Wang, QL ;
Potti, A ;
Chasse, D ;
Joshi, MB ;
Harpole, D ;
Lancaster, JM ;
Berchuck, A ;
Olson, JA ;
Marks, JR ;
Dressman, HK ;
West, M ;
Nevins, JR .
NATURE, 2006, 439 (7074) :353-357