Locking the Elbow: Improved Antibody Fab Fragments as Chaperones for Structure Determination

被引:46
作者
Bailey, Lucas J. [1 ]
Sheehy, Kimberly M. [1 ]
Dominik, Pawel K. [1 ]
Liang, Wenguang G. [2 ]
Rui, Huan [1 ]
Clark, Michael [1 ]
Jaskolowski, Mateusz [1 ,3 ,4 ]
Kim, Yejoon [1 ]
Deneka, Dawid [1 ,5 ]
Tang, Wei-Jen [2 ]
Kossiakoff, Anthony A. [1 ,6 ]
机构
[1] Univ Chicago, Dept Biochem & Mol Biol, 920 E 58Th St, Chicago, IL 60637 USA
[2] Univ Chicago, Ben May Inst Canc Res, Chicago, IL 60637 USA
[3] Univ Gdansk, Gdansk, Poland
[4] Med Univ Gdansk, Int Fac Biotechnol, Gdansk, Poland
[5] Jagiellonian Univ, Fac Biochem Biophys & Biotechnol, Krakow, Poland
[6] Univ Chicago, Inst Biophys Dynam, Chicago, IL 60637 USA
关键词
crystallization chaperone; Fab elbow angle; antibody engineering; cryo-EM fiducial mark; Fab-protein complex; FULL-LENGTH KCSA; PHAGE DISPLAY; CRYSTALLIZATION; AFFINITY; MECHANISM; PROTEINS; MOTION;
D O I
10.1016/j.jmb.2017.12.012
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Antibody Fab fragments have been exploited with significant success to facilitate the structure determination of challenging macromolecules as crystallization chaperones and as molecular fiducial marks for single particle cryo-electron microscopy approaches. However, the inherent flexibility of the "elbow" regions, which link the constant and variable domains of the Fab, can introduce disorder and thus diminish their effectiveness. We have developed a phage display engineering strategy to generate synthetic Fab variants that significantly reduces elbow flexibility, while maintaining their high affinity and stability. This strategy was validated using previously recalcitrant Fab antigen complexes where introduction of an engineered elbow region enhanced crystallization and diffraction resolution. Furthermore, incorporation of the mutations appears to be generally portable to other synthetic antibodies and may serve as a universal strategy to enhance the success rates of Fabs as structure determination chaperones. (C) 2017 Elsevier Ltd. All rights reserved.
引用
收藏
页码:337 / 347
页数:11
相关论文
共 41 条
  • [41] MotionCor2: anisotropic correction of beam-induced motion for improved cryo-electron microscopy
    Zheng, Shawn Q.
    Palovcak, Eugene
    Armache, Jean-Paul
    Verba, Kliment A.
    Cheng, Yifan
    Agard, David A.
    [J]. NATURE METHODS, 2017, 14 (04) : 331 - 332