In-silicoanti-inflammatory potential of guaiane dimers fromXylopia vielanatargeting COX-2

被引:57
作者
Hassan, Syed Shams ul [1 ,2 ]
Zhang, Wei-Dong [1 ,2 ]
Jin, Hui-zi [1 ,2 ]
Basha, Syed Hussain [3 ]
Priya, S. V. S. Sasi [3 ,4 ]
机构
[1] Shanghai Jiao Tong Univ, Sch Pharm, Shanghai Key Lab Mol Engn Chiral Drugs, Shanghai 200240, Peoples R China
[2] Shanghai Jiao Tong Univ, Sch Pharm, Dept Nat Prod Chem, Shanghai 200240, Peoples R China
[3] Innovat Informat Technol, Hyderabad, Telangana, India
[4] MS Ramaiah Univ Appl Sci, Dept Pharmaceut Chem, Fac Pharm, Bangalore, Karnataka, India
关键词
Xylopia vielana; anti-inflammatory; molecular docking; ADME; MD simulations; EMERGING BIOPHARMACEUTICALS; MOLECULAR DOCKING; DRUG; SIMULATION; PREDICTION; ACCURACY; DYNAMICS; SITE;
D O I
10.1080/07391102.2020.1815579
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Natural products of herbal origin are prodigious to display diverse pharmacological activities. In the present study, five guaiane-type sesquiterpene dimers, xylopidimers A - E (1-5), isolated fromXylopia vielanaspecies were tested against COX-2 protein target (PDB: 1CX2), a potent target for anti-inflammatory agents. To better understand the pharmacological properties of all these compounds, in this work, a systemicin silicostudy was performed on xylopidimers A-E using molecular docking, ADMET analysis and MD simulations. During ADMET predictions the two compounds xylopidimer C, D displayed best results as compared to others. The compound xylopidimer C was further evaluated for its MD simulations and its molecular interactions with COX2 complex showed clear interactions with active gorge of the enzyme through hydrogen bonding as well as hydrophobic contacts. The xylopidimer C has shown the best binding potential with -10.57Kcal/mol energy with 17.92 nano molar of predicted inhibition constant better than Ibuprofen and Felbinac. These findings provide enough significant information for designing and developing novel targeted base anti-inflammatory drugs from guaiane dimers.
引用
收藏
页码:484 / 498
页数:15
相关论文
共 45 条
  • [11] Computational protein-ligand docking and virtual drug screening with the AutoDock suite
    Forli, Stefano
    Huey, Ruth
    Pique, Michael E.
    Sanner, Michel F.
    Goodsell, David S.
    Olson, Arthur J.
    [J]. NATURE PROTOCOLS, 2016, 11 (05) : 905 - 919
  • [12] D3R grand challenge 2015: Evaluation of protein-ligand pose and affinity predictions
    Gathiaka, Symon
    Liu, Shuai
    Chiu, Michael
    Yang, Huanwang
    Stuckey, Jeanne A.
    Kang, You Na
    Delproposto, Jim
    Kubish, Ginger
    Dunbar, James B., Jr.
    Carlson, Heather A.
    Burley, Stephen K.
    Walters, W. Patrick
    Amaro, Rommie E.
    Feher, Victoria A.
    Gilson, Michael K.
    [J]. JOURNAL OF COMPUTER-AIDED MOLECULAR DESIGN, 2016, 30 (09) : 651 - 668
  • [13] Combinatorial roles of nuclear receptors in inflammation and immunity
    Glass, CK
    Ogawa, S
    [J]. NATURE REVIEWS IMMUNOLOGY, 2006, 6 (01) : 44 - 55
  • [14] Xylopidimers A-E, Five New Guaiane Dimers with Various Carbon Skeletons from the Roots of Xylopia vielana
    Guo, Yi-Gong
    Xie, Yang-Guo
    Wu, Guo-Jing
    Cheng, Tao-Fang
    Zhu, Sheng-Lan
    Yan, Shi-Kai
    Jin, Hui-Zi
    Zhang, Wei-Dong
    [J]. ACS OMEGA, 2019, 4 (01): : 2047 - 2052
  • [15] Hassan S. S., 2017, ENVIRON TOXICOL PHAR, V49, P34, DOI [10.1016/j.etap.2016.11.015, DOI 10.1016/j.etap.2016.11.015]
  • [16] Hassan Syed Shamsul, 2017, Pak J Pharm Sci, V30, P313
  • [17] Khan I, 2019, PAK J PHARM SCI, V32, P631
  • [18] Synthesis, molecular docking with COX 1& II enzyme, ADMET screening and in vivo anti-inflammatory activity of oxadiazole, thiadiazole and triazole analogs of felbinac
    Khan, Shah Alam
    Imam, S. Monawwar
    Ahmad, Aftab
    Basha, Syed Hussain
    Husain, Asif
    [J]. JOURNAL OF SAUDI CHEMICAL SOCIETY, 2018, 22 (04) : 469 - 484
  • [19] Structural basis for selective inhibition of cyclooxygenase-2 by anti-inflammatory agents
    Kurumbail, RG
    Stevens, AM
    Gierse, JK
    McDonald, JJ
    Stegeman, RA
    Pak, JY
    Gildehaus, D
    Miyashiro, JM
    Penning, TD
    Seibert, K
    Isakson, PC
    Stallings, WC
    [J]. NATURE, 1996, 384 (6610) : 644 - 648
  • [20] Personal experience with four kinds of chemical structure drawing software: Review on ChemDraw, ChemWindow, ISIS/Draw, and ChemSketch
    Li, ZJ
    Wan, HG
    Shi, YH
    Ouyang, PK
    [J]. JOURNAL OF CHEMICAL INFORMATION AND COMPUTER SCIENCES, 2004, 44 (05): : 1886 - 1890