Non-coding RNAs: could they be the answer?

被引:8
作者
Costa, Fabricio F. [1 ,2 ]
机构
[1] Northwestern Univ, Feinberg Sch Med, Chicago, IL 60611 USA
[2] Childrens Mem Res Ctr, Canc Biol & Epigenom Program, Chicago, IL 60611 USA
关键词
GWAS; complex diseases; genetic traits; non-coding RNAs; functionality; ASSOCIATION;
D O I
10.1093/bfgp/elq029
中图分类号
Q81 [生物工程学(生物技术)]; Q93 [微生物学];
学科分类号
071005 ; 0836 ; 090102 ; 100705 ;
摘要
Despite a considerable amount of effort by different groups to evaluate the genetic traits associated with complex diseases by genome-wide association studies (GWAS), just a few regions, mainly linked to protein-coding genes, were identified. Recently, studies from different groups have implicated new classes of long non-coding RNAs (ncRNAs) to important molecular mechanisms. Additionally, high-throughput transcriptome analyses of different cell types have shown that an unexpected amount of genomic DNA is transcribed. I am writing to propose that the majority of the regions that do not clearly correspond to a 'gene' controlling certain traits might be ncRNAs or other regulatory transcripts that are still unknown. These regions will need to be carefully examined in the future.
引用
收藏
页码:316 / 319
页数:4
相关论文
共 18 条
[1]   Genome-wide analysis of a long-term evolution experiment with Drosophila [J].
Burke, Molly K. ;
Dunham, Joseph P. ;
Shahrestani, Parvin ;
Thornton, Kevin R. ;
Rose, Michael R. ;
Long, Anthony D. .
NATURE, 2010, 467 (7315) :587-U111
[2]   Non-coding RNAs, epigenetics and complexity [J].
Costa, Fabricio F. .
GENE, 2008, 410 (01) :9-17
[3]   Non-coding RNAs: Lost in translation? [J].
Costa, Fabricio F. .
GENE, 2007, 386 (1-2) :1-10
[4]   Non-coding RNAs: Meet thy masters [J].
Costa, Fabricio F. .
BIOESSAYS, 2010, 32 (07) :599-608
[5]   Non-coding RNAs and new opportunities for the private sector [J].
Costa, Fabricio F. .
DRUG DISCOVERY TODAY, 2009, 14 (9-10) :446-452
[6]  
*ENCODE PROJ CONS, 2005, NATURE, V447, P799
[7]   The Evf-2 noncoding RNA is transcribed from the Dlx-5/6 ultraconserved region and functions as a Dlx-2 transcriptional coactivator [J].
Feng, Jianchi ;
Bi, Chumming ;
Clark, Brian S. ;
Mady, Rina ;
Shah, Palak ;
Kohtz, Jhumku D. .
GENES & DEVELOPMENT, 2006, 20 (11) :1470-1484
[8]   What is a gene, post-ENCODE? History and updated definition [J].
Gerstein, Mark B. ;
Bruce, Can ;
Rozowsky, Joel S. ;
Zheng, Deyou ;
Du, Jiang ;
Korbel, Jan O. ;
Emanuelsson, Olof ;
Zhang, Zhengdong D. ;
Weissman, Sherman ;
Snyder, Michael .
GENOME RESEARCH, 2007, 17 (06) :669-681
[9]   Hints of hidden heritability in GWAS [J].
Gibson, Greg .
NATURE GENETICS, 2010, 42 (07) :558-560
[10]   Long non-coding RNA HOTAIR reprograms chromatin state to promote cancer metastasis [J].
Gupta, Rajnish A. ;
Shah, Nilay ;
Wang, Kevin C. ;
Kim, Jeewon ;
Horlings, Hugo M. ;
Wong, David J. ;
Tsai, Miao-Chih ;
Hung, Tiffany ;
Argani, Pedram ;
Rinn, John L. ;
Wang, Yulei ;
Brzoska, Pius ;
Kong, Benjamin ;
Li, Rui ;
West, Robert B. ;
van de Vijver, Marc J. ;
Sukumar, Saraswati ;
Chang, Howard Y. .
NATURE, 2010, 464 (7291) :1071-U148