HEATSTER: A Database and Web Server for Identification and Classification of Heat Stress Transcription Factors in Plants

被引：26
作者：
Berz, Jannik [1 ]
Simm, Stefan [1 ,2 ]
Schuster, Sebastian [3 ]
Scharf, Klaus-Dieter [1 ]
Schleiff, Enrico [1 ,2 ]
Ebersberger, Ingo [4 ,5 ,6 ]
机构：
[1] Goethe Univ, Dept Biosci, Mol Cell Biol Plants, Bioctr N200,Max von Laue Str 9, D-60438 Frankfurt, Germany
[2] Frankfurt Inst Adv Studies, Dept Life Sci, Frankfurt, Germany
[3] Max F Perutz Labs, Ctr Integrat Bioinformat Vienna CIBIV, Vienna, Austria
[4] Goethe Univ, Inst Cell Biol & Neurosci, Dept Biosci, Appl Bioinformat Grp, Biol Max von Laue Str 13, D-60438 Frankfurt, Germany
[5] Senckenberg Biodivers & Climate Res Ctr BiK F, Frankfurt, Germany
[6] LOEWE Ctr Translat Biodivers Genom LOEWE TBG, Frankfurt, Germany
来源：
BIOINFORMATICS AND BIOLOGY INSIGHTS | 2019年 / 13卷
关键词：
HSF; motif search; database; heat stress; CHAPERONES; WORLD;
D O I：
10.1177/1177932218821365
中图分类号：
Q5 [生物化学];
学科分类号：
071010 ; 081704 ;
摘要：
Heat stress transcription factors (HSFs) regulate transcriptional response to a large number of environmental influences, such as temperature fluctuations and chemical compound applications. Plant HSFs represent a large and diverse gene family. The HSF members vary substantially both in gene expression patterns add molecular functions. HEATSTER is a web resource for mining, annotating, and analyzing members of the different classes of HSFs in plants. A web-interface allows the identification and class assignment of HSFs, intuitive searches the database and visualization of conserved motifs, and domains to classify novel HSFs.
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页数：5
相关论文
共 16 条
  • [1] [Anonymous], 2016, FRONT PLANT SCI, DOI [DOI 10.3389/fpls.2016.00114, DOI 10.3389/FPLS.2016.00114]
  • [2] MEME SUITE: tools for motif discovery and searching
    Bailey, Timothy L.
    Boden, Mikael
    Buske, Fabian A.
    Frith, Martin
    Grant, Charles E.
    Clementi, Luca
    Ren, Jingyuan
    Li, Wilfred W.
    Noble, William S.
    [J]. NUCLEIC ACIDS RESEARCH, 2009, 37 : W202 - W208
  • [3] Combining evidence using p-values: application to sequence homology searches
    Bailey, TL
    Gribskov, M
    [J]. BIOINFORMATICS, 1998, 14 (01) : 48 - 54
  • [4] Heat stress response in plants:: a complex game with chaperones and more than twenty heat stress transcription factors
    Baniwal, SK
    Bharti, K
    Chan, KY
    Fauth, M
    Ganguli, A
    Kotak, S
    Mishra, SK
    Nover, L
    Port, M
    Scharf, KD
    Tripp, J
    Weber, C
    Zielinski, D
    von Koskull-Döring, P
    [J]. JOURNAL OF BIOSCIENCES, 2004, 29 (04) : 471 - 487
  • [5] Genome-wide analysis identifies chickpea (Cicer arietinum) heat stress transcription factors (Hsfs) responsive to heat stress at the pod development stage
    Chidambaranathan, Parameswaran
    Jagannadham, Prasanth Tej Kumar
    Satheesh, Viswanathan
    Kohli, Deshika
    Basavarajappa, Santosh Halasabala
    Chellapilla, Bharadwaj
    Kumar, Jitendra
    Jain, Pradeep Kumar
    Srinivasan, R.
    [J]. JOURNAL OF PLANT RESEARCH, 2018, 131 (03) : 525 - 542
  • [6] Genome-Wide Investigation of Hsf Genes in Sesame Reveals Their Segmental Duplication Expansion and Their Active Role in Drought Stress Response
    Dossa, Komivi
    Diouf, Diaga
    Cisse, Ndiaga
    [J]. FRONTIERS IN PLANT SCIENCE, 2016, 7
  • [7] Prospects of engineering thermotolerance in crops through modulation of heat stress transcription factor and heat shock protein networks
    Fragkostefanakis, Sotirios
    Roeth, Sascha
    Schleiff, Enrico
    Scharf, Klaus-Dieter
    [J]. PLANT CELL AND ENVIRONMENT, 2015, 38 (09) : 1881 - 1895
  • [8] Chaperone network composition in Solanum lycopersicum explored by transcriptome profiling and microarray meta-analysis
    Fragkostefanakis, Sotirios
    Simm, Stefan
    Paul, Puneet
    Bublak, Daniela
    Scharf, Klaus-Dieter
    Schleiff, Enrico
    [J]. PLANT CELL AND ENVIRONMENT, 2015, 38 (04) : 693 - 709
  • [9] Crosstalk between Hsp90 and Hsp70 Chaperones and Heat Stress Transcription Factors in Tomato
    Hahn, Alexander
    Bublak, Daniela
    Schleiff, Enrico
    Scharf, Klaus-Dieter
    [J]. PLANT CELL, 2011, 23 (02) : 741 - 755
  • [10] Heat shock factor gene family in rice: Genomic organization and transcript expression profiling in response to high temperature, low temperature and oxidative stresses
    Mittal, Dheeraj
    Chakrabarti, Sveta
    Sarkar, Anshuk
    Singh, Amanjot
    Grover, Anil
    [J]. PLANT PHYSIOLOGY AND BIOCHEMISTRY, 2009, 47 (09) : 785 - 795
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