Three problems with the conventional delta-model for biomass sampling data, and a computationally efficient alternative

被引:67
作者
Thorson, James T. [1 ]
机构
[1] NOAA, Fisheries Resource Assessment & Monitoring Div, Northwest Fisheries Sci Ctr, Natl Marine Fisheries Serv, Seattle, WA 98112 USA
关键词
TWEEDIE DISTRIBUTION; RELATIVE ABUNDANCE; GAMMA; CATCH;
D O I
10.1139/cjfas-2017-0266
中图分类号
S9 [水产、渔业];
学科分类号
0908 ;
摘要
Ecologists often analyse biomass sampling data that result in many zeros, where remaining samples can take any positive real number. Samples are often analysed using a "delta-model" that combines two separate generalized linear models, GLMs (for encounter probability and positive catch rates), or less often using a compound Poisson-gamma (CPG) distribution that is computationally expensive. I discuss three theoretical problems with the conventional delta-model: difficulty interpreting covariates for encounter probability, the assumed independence of the two GLMs, and the biologically implausible form when eliminating covariates for either GLM. I then derive an alternative "Poisson-link model" that solves these problems. To illustrate, I use biomass samples for 113 fish populations to show that the Poisson-link model improves fit (and decreases residual spatial variation) for >80% of populations relative to the conventional delta-model. A simulation experiment illustrates that CPG and Poisson-link models estimate covariate effects that are similar and biologically interpretable. I therefore recommend the Poisson-link model as a useful alternative to the conventional delta-model with similar properties to the CPG distribution.
引用
收藏
页码:1369 / 1382
页数:14
相关论文
共 49 条
[31]  
2
[32]  
Raring N. W, 2016, DATA REPORT 2012 ALE
[33]  
Royle JA, 2003, ECOLOGY, V84, P777, DOI 10.1890/0012-9658(2003)084[0777:EAFRPA]2.0.CO
[34]  
2
[35]   Application of the Tweedie distribution to zero-catch data in CPUE analysis [J].
Shono, Hiroshi .
FISHERIES RESEARCH, 2008, 93 (1-2) :154-162
[36]   Automatic approximation of the marginal likelihood in non-Gaussian hierarchical models [J].
Skaug, Hans J. ;
Fournier, David A. .
COMPUTATIONAL STATISTICS & DATA ANALYSIS, 2006, 51 (02) :699-709
[37]  
Smyth GordonK., 1996, P 2 AUSTR JAPAN WORK, P17
[38]  
Stauffer G., 2004, NOAA PROTOCOLS GROUN
[39]   Analysis of groundfish survey abundance data: Combining the GLM and delta approaches [J].
Stefansson, G .
ICES JOURNAL OF MARINE SCIENCE, 1996, 53 (03) :577-588
[40]   Comparing estimates of abundance trends and distribution shifts using single- and multispecies models of fishes and biogenic habitat [J].
Thorson, James T. ;
Barnett, Lewis A. K. .
ICES JOURNAL OF MARINE SCIENCE, 2017, 74 (05) :1311-1321