A data-driven framework for mapping domains of human neurobiology

被引:34
作者
Beam, Elizabeth [1 ,2 ,3 ]
Potts, Christopher [4 ]
Poldrack, Russell A. [1 ,2 ]
Etkin, Amit [1 ,3 ,5 ]
机构
[1] Stanford Univ, Wu Tsai Neurosci Inst, Stanford, CA 94305 USA
[2] Stanford Univ, Dept Psychol, Stanford, CA 94305 USA
[3] Stanford Univ, Dept Psychiat & Behav Sci, Stanford, CA 94305 USA
[4] Stanford Univ, Dept Linguist, Stanford, CA 94305 USA
[5] Alto Neurosci Inc, Los Altos, CA USA
基金
美国国家卫生研究院;
关键词
TEMPORAL DYNAMICS; COGNITIVE CONTROL; NETWORKS; MODEL; CLASSIFICATION; PSYCHIATRY; DEPRESSION; ONTOLOGIES; ATTENTION; EMOTION;
D O I
10.1038/s41593-021-00948-9
中图分类号
Q189 [神经科学];
学科分类号
071006 ;
摘要
Functional neuroimaging has been a mainstay of human neuroscience for the past 25 years. Interpretation of functional magnetic resonance imaging (fMRI) data has often occurred within knowledge frameworks crafted by experts, which have the potential to amplify biases that limit the replicability of findings. Here, we use a computational approach to derive a data-driven framework for neurobiological domains that synthesizes the texts and data of nearly 20,000 human neuroimaging articles. Across multiple levels of domain specificity, the structure-function links within domains better replicate in held-out articles than those mapped from dominant frameworks in neuroscience and psychiatry. We further show that the data-driven framework partitions the literature into modular subfields, for which domains serve as generalizable prototypes of structure-function patterns in single articles. The approach to computational ontology we present here is the most comprehensive characterization of human brain circuits quantifiable with fMRI and may be extended to synthesize other scientific literatures. Beam et al. created a data-driven mapping of human brain function, drawing on full texts and coordinate data reported in neuroimaging studies. This validated framework outperformed leading and widely used knowledge frameworks, namely Research Domain Criteria (RDoC) and the Diagnostic and Statistical Manual of Mental Disorders (DSM).
引用
收藏
页码:1733 / 1744
页数:12
相关论文
共 51 条
[1]   Ontology engineering [J].
Alterovitz, Gil ;
Xiang, Michael ;
Hill, David P. ;
Lomax, Jane ;
Liu, Jonathan ;
Cherkassky, Michael ;
Dreyfuss, Jonathan ;
Mungall, Chris ;
Harris, Midori A. ;
Dolan, Mary E. ;
Blake, Judith A. ;
Ramoni, Marco F. .
NATURE BIOTECHNOLOGY, 2010, 28 (02) :128-130
[2]   Gene Ontology: tool for the unification of biology [J].
Ashburner, M ;
Ball, CA ;
Blake, JA ;
Botstein, D ;
Butler, H ;
Cherry, JM ;
Davis, AP ;
Dolinski, K ;
Dwight, SS ;
Eppig, JT ;
Harris, MA ;
Hill, DP ;
Issel-Tarver, L ;
Kasarskis, A ;
Lewis, S ;
Matese, JC ;
Richardson, JE ;
Ringwald, M ;
Rubin, GM ;
Sherlock, G .
NATURE GENETICS, 2000, 25 (01) :25-29
[3]   Ontologies in biology: Design, applications and future challenges [J].
Bard, JBL ;
Rhee, SY .
NATURE REVIEWS GENETICS, 2004, 5 (03) :213-222
[4]  
Barrett LF, 2017, SOC COGN AFFECT NEUR, V12, P1, DOI [10.1093/scan/nsx060, 10.1093/scan/nsw154]
[5]   CONTROLLING THE FALSE DISCOVERY RATE - A PRACTICAL AND POWERFUL APPROACH TO MULTIPLE TESTING [J].
BENJAMINI, Y ;
HOCHBERG, Y .
JOURNAL OF THE ROYAL STATISTICAL SOCIETY SERIES B-STATISTICAL METHODOLOGY, 1995, 57 (01) :289-300
[6]   A mechanistic model of connector hubs, modularity and cognition [J].
Bertolero, Maxwell A. ;
Yeo, B. T. Thomas ;
Bassett, Danielle S. ;
D'Esposito, Mark .
NATURE HUMAN BEHAVIOUR, 2018, 2 (10) :765-777
[7]   Where Is the Semantic System? A Critical Review and Meta-Analysis of 120 Functional Neuroimaging Studies [J].
Binder, Jeffrey R. ;
Desai, Rutvik H. ;
Graves, William W. ;
Conant, Lisa L. .
CEREBRAL CORTEX, 2009, 19 (12) :2767-2796
[8]   Ontological Dimensions of Cognitive-Neural Mappings [J].
Bolt, Taylor ;
Nomi, Jason S. ;
Arens, Rachel ;
Vij, Shruti G. ;
Riedel, Michael ;
Salo, Taylor ;
Laird, Angela R. ;
Eickhoff, Simon B. ;
Uddin, Lucina Q. .
NEUROINFORMATICS, 2020, 18 (03) :451-463
[9]  
Bolukbasi T, 2016, ADV NEUR IN, V29
[10]   Complex brain networks: graph theoretical analysis of structural and functional systems [J].
Bullmore, Edward T. ;
Sporns, Olaf .
NATURE REVIEWS NEUROSCIENCE, 2009, 10 (03) :186-198