Carcinoma Type Classification From High-Resolution Breast Microscopy Images Using a Hybrid Ensemble of Deep Convolutional Features and Gradient Boosting Trees Classifiers

被引:25
作者
Sanyal, Ritabrata [1 ]
Kar, Devroop [2 ]
Sarkar, Ram [2 ]
机构
[1] Kalyani Govt Engn Coll, Dept Comp Sci & Engi Neering, Kalyani 741235, W Bengal, India
[2] Jadavpur Univ, Dept Comp Sci & Engn, Kolkata 700054, W Bengal, India
关键词
Feature extraction; Histopathology; Breast cancer; Breast; Complexity theory; Task analysis; Image resolution; histopathology image; deep learning; CNN; ensemble; XGBoost; NEURAL-NETWORKS; CANCER; DATASET;
D O I
10.1109/TCBB.2021.3071022
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
Breast cancer is one of the main causes behind cancer deaths in women worldwide. Yet, owing to the complexity of the histopathological images and the arduousness of manual analysis task, the entire diagnosis process becomes time-consuming and the results are often contingent on the pathologist's subjectivity. Thus developing an automated, precise histopathological image classification system is crucial. This paper presents a novel hybrid ensemble framework consisting of multiple fine-tuned convolutional neural network (CNN) architectures as supervised feature extractors and eXtreme gradient boosting trees (XGBoost) as a top-level classifier, for patch wise classification of high-resolution breast histopathology images. Due to the semantic complexity of the patch images, a single CNN architecture may not always extract high quality features, and the traditional Softmax classifier might not provide ideal results for classifying the CNN extracted features. Thus we aim to improve patch wise classification by proposing a hybrid ensemble model that incorporates different discriminating feature representations of the patches, coupled with XGBoost for robust classification. Experimental results show that our proposed method outperforms state-of-the-art methods to the best of our knowledge.
引用
收藏
页码:2124 / 2136
页数:13
相关论文
共 59 条
[1]   An Integrated Region-, Boundary-, Shape-Based Active Contour for Multiple Object Overlap Resolution in Histological Imagery [J].
Ali, Sahirzeeshan ;
Madabhushi, Anant .
IEEE TRANSACTIONS ON MEDICAL IMAGING, 2012, 31 (07) :1448-1460
[2]  
[Anonymous], 2018, LECT NOTES COMPUT SC, DOI DOI 10.1007/978-3-319-93000-8_81
[3]   Classification of breast cancer histology images using Convolutional Neural Networks [J].
Araujo, Teresa ;
Aresta, Guilherme ;
Castro, Eduardo ;
Rouco, Jose ;
Aguiar, Paulo ;
Eloy, Catarina ;
Polonia, Antonio ;
Campilho, Aurelio .
PLOS ONE, 2017, 12 (06)
[4]   BACH: Grand challenge on breast cancer histology images [J].
Aresta, Guilherme ;
Araujo, Teresa ;
Kwok, Scotty ;
Chennamsetty, Sai Saketh ;
Safwan, Mohammed ;
Alex, Varghese ;
Marami, Bahram ;
Prastawa, Marcel ;
Chan, Monica ;
Donovan, Michael ;
Fernandez, Gerardo ;
Zeineh, Jack ;
Kohl, Matthias ;
Walz, Christoph ;
Ludwig, Florian ;
Braunewell, Stefan ;
Baust, Maximilian ;
Quoc Dang Vu ;
Minh Nguyen Nhat To ;
Kim, Eal ;
Kwak, Jin Tae ;
Galal, Sameh ;
Sanchez-Freire, Veronica ;
Brancati, Nadia ;
Frucci, Maria ;
Riccio, Daniel ;
Wang, Yaqi ;
Sun, Lingling ;
Ma, Kaiqiang ;
Fang, Jiannan ;
Kone, Ismael ;
Boulmane, Lahsen ;
Campilho, Aurelio ;
Eloy, Catarina ;
Polonia, Antonio ;
Aguiar, Paulo .
MEDICAL IMAGE ANALYSIS, 2019, 56 :122-139
[5]   Context-Aware Learning Using Transferable Features for Classification of Breast Cancer Histology Images [J].
Awan, Ruqayya ;
Koohbanani, Navid Alemi ;
Shaban, Muhammad ;
Lisowska, Anna ;
Rajpoot, Nasir .
IMAGE ANALYSIS AND RECOGNITION (ICIAR 2018), 2018, 10882 :788-795
[6]  
Bailing Zhang, 2011, 2011 4th International Conference on Biomedical Engineering and Informatics, P180, DOI 10.1109/BMEI.2011.6098229
[7]   Incorporating Domain Knowledge for Tubule Detection in Breast Histopathology Using O'Callaghan Neighborhoods [J].
Basavanhally, Ajay ;
Yu, Elaine ;
Xu, Jun ;
Ganesan, Shridar ;
Feldman, Michael ;
Tomaszewski, John ;
Madabhushi, Anant .
MEDICAL IMAGING 2011: COMPUTER-AIDED DIAGNOSIS, 2011, 7963
[8]  
Bayramoglu N, 2016, INT C PATT RECOG, P2440, DOI 10.1109/ICPR.2016.7900002
[9]  
Bishop C. M., 2006, PATTERN RECOGN, V4, P738, DOI [10.5555/1162264, DOI 10.18637/JSS.V017.B05]
[10]  
Brook A., 2008, CS200807