Bacterial epidemiology and biology - lessons from genome sequencing

被引:70
作者
Parkhill, Julian [2 ]
Wren, Brendan W. [1 ]
机构
[1] Univ London London Sch Hyg & Trop Med, Dept Pathogen Mol Biol, London WC1E 7HT, England
[2] Sanger Inst, Cambridge CB10 1SA, England
基金
英国惠康基金;
关键词
CLOSTRIDIUM-DIFFICILE; EVOLUTION; ASSOCIATION; OUTBREAK; HISTORY;
D O I
10.1186/gb-2011-12-10-230
中图分类号
Q81 [生物工程学(生物技术)]; Q93 [微生物学];
学科分类号
071005 ; 0836 ; 090102 ; 100705 ;
摘要
Next-generation sequencing has ushered in a new era of microbial genomics, enabling the detailed historical and geographical tracing of bacteria. This is helping to shape our understanding of bacterial evolution.
引用
收藏
页数:7
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共 32 条
[1]   Microevolution and history of the plague bacillus, Yersinia pestis [J].
Achtman, M ;
Morelli, G ;
Zhu, PX ;
Wirth, T ;
Diehl, I ;
Kusecek, B ;
Vogler, AJ ;
Wagner, DM ;
Allender, CJ ;
Easterday, WR ;
Chenal-Francisque, V ;
Worsham, P ;
Thomson, NR ;
Parkhill, J ;
Lindler, LE ;
Carniel, E ;
Keim, P .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2004, 101 (51) :17837-17842
[2]   Evolution, Population Structure, and Phylogeography of Genetically Monomorphic Bacterial Pathogens [J].
Achtman, Mark .
ANNUAL REVIEW OF MICROBIOLOGY, 2008, 62 :53-70
[3]  
[Anonymous], FINAL REPORT INDEPEN
[4]   CLOSTRIDIUM-DIFFICILE - HISTORY OF ITS ROLE AS AN ENTERIC PATHOGEN AND THE CURRENT STATE OF KNOWLEDGE ABOUT THE ORGANISM [J].
BARTLETT, JG .
CLINICAL INFECTIOUS DISEASES, 1994, 18 :S265-S272
[5]   Molecular complexity of successive bacterial epidemics deconvoluted by comparative pathogenomics [J].
Beres, Stephen B. ;
Carroll, Ronan K. ;
Shea, Patrick R. ;
Sitkiewicz, Izabela ;
Martinez-Gutierrez, Juan Carlos ;
Low, Donald E. ;
McGeer, Allison ;
Willey, Barbara M. ;
Green, Karen ;
Tyrrell, Gregory J. ;
Goldman, Thomas D. ;
Feldgarden, Michael ;
Birren, Bruce W. ;
Fofanov, Yuriy ;
Boos, John ;
Wheaton, William D. ;
Honisch, Christiane ;
Musser, James M. .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2010, 107 (09) :4371-4376
[6]   Association of a Bacteriophage with Meningococcal Disease in Young Adults [J].
Bille, Emmanuelle ;
Ure, Roisin ;
Gray, Stephen J. ;
Kaczmarski, Edward B. ;
McCarthy, Noel D. ;
Nassif, Xavier ;
Maiden, Martin C. J. ;
Tinsley, Colin R. .
PLOS ONE, 2008, 3 (12)
[7]   Cholera tightens grip on Haiti [J].
Butler, Declan .
NATURE, 2010, 468 (7323) :483-484
[8]  
BUUHOI A, 1980, J BACTERIOL, V143, P313
[9]   The Origin of the Haitian Cholera Outbreak Strain. [J].
Chin, Chen-Shan ;
Sorenson, Jon ;
Harris, Jason B. ;
Robins, William P. ;
Charles, Richelle C. ;
Jean-Charles, Roger R. ;
Bullard, James ;
Webster, Dale R. ;
Kasarskis, Andrew ;
Peluso, Paul ;
Paxinos, Ellen E. ;
Yamaichi, Yoshiharu ;
Calderwood, Stephen B. ;
Mekalanos, John J. ;
Schadt, Eric E. ;
Waldor, Matthew K. .
NEW ENGLAND JOURNAL OF MEDICINE, 2011, 364 (01) :33-42
[10]   Genomic evolution of Vibrio cholerae [J].
Cho, Yong-Joon ;
Yi, Hana ;
Lee, Je Hee ;
Kim, Dong Wook ;
Chun, Jongsik .
CURRENT OPINION IN MICROBIOLOGY, 2010, 13 (05) :646-651