Epigenetic Regulation of Gene Expression in Human Cells by Noncoding RNAs

被引:5
作者
Knowling, Stuart [1 ]
Morris, Kevin V. [1 ]
机构
[1] Scripps Res Inst, Dept Mol & Expt Med, La Jolla, CA 92037 USA
来源
PROGRESS IN MOLECULAR BIOLOGY AND TRANSLATIONAL SCIENCE: CELLULAR RNA INTERFERENCE MECHANISMS, VOL 102 | 2011年 / 102卷
关键词
ANTISENSE RNA; TRANSCRIPTION; HETEROCHROMATIN; PLURIPOTENCY; INHERITANCE; COMPLEXES; ENZYME; OCT4;
D O I
10.1016/B978-0-12-415795-8.00003-9
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Emerging evidence has begun to suggest that a vast array of noncoding RNAs is operative in human cells, with some containing the ability to directly modulate gene transcription. While observations of noncoding-RNA-based epigenetic regulation of gene expression were in the past relegated to imprinted or X-linked genes, it is now becoming apparent that several different genes in differentiated cells may be under some form of RNA-based regulatory control. Studies have begun to discern certain aspects of an underlying mechanism of action whereby noncoding RNAs modulate gene transcription. Much of the evidence suggests that noncoding RNAs are functional in controlling gene transcription by the targeted recruitment of epigenetic silencing complexes to homology-containing loci in the genome. The results of these studies, as well as the implications that a vast array of noncoding-RNA-based regulatory networks may be operative in human cells, are discussed. Knowledge of this emerging RNA-based epigenetic regulatory network has implications in cellular evolution as well as in an entirely new area of pharmacopeia.
引用
收藏
页码:1 / 10
页数:10
相关论文
共 45 条
[1]   Development of aptamer therapeutics [J].
Bunka, David H. J. ;
Platonova, Olga ;
Stockley, Peter G. .
CURRENT OPINION IN PHARMACOLOGY, 2010, 10 (05) :557-562
[2]   Antisense RNA stabilization induces transcriptional gene silencing via histone deacetylation in s.: cerevisiae [J].
Camblong, Jurgi ;
Iglesias, Nahid ;
Fickentscher, Céline ;
Dieppois, Guennaelle ;
Stutz, Françoise .
CELL, 2007, 131 (04) :706-717
[3]   The transcriptional landscape of the mammalian genome [J].
Carninci, P ;
Kasukawa, T ;
Katayama, S ;
Gough, J ;
Frith, MC ;
Maeda, N ;
Oyama, R ;
Ravasi, T ;
Lenhard, B ;
Wells, C ;
Kodzius, R ;
Shimokawa, K ;
Bajic, VB ;
Brenner, SE ;
Batalov, S ;
Forrest, ARR ;
Zavolan, M ;
Davis, MJ ;
Wilming, LG ;
Aidinis, V ;
Allen, JE ;
Ambesi-Impiombato, X ;
Apweiler, R ;
Aturaliya, RN ;
Bailey, TL ;
Bansal, M ;
Baxter, L ;
Beisel, KW ;
Bersano, T ;
Bono, H ;
Chalk, AM ;
Chiu, KP ;
Choudhary, V ;
Christoffels, A ;
Clutterbuck, DR ;
Crowe, ML ;
Dalla, E ;
Dalrymple, BP ;
de Bono, B ;
Della Gatta, G ;
di Bernardo, D ;
Down, T ;
Engstrom, P ;
Fagiolini, M ;
Faulkner, G ;
Fletcher, CF ;
Fukushima, T ;
Furuno, M ;
Futaki, S ;
Gariboldi, M .
SCIENCE, 2005, 309 (5740) :1559-1563
[4]   Transcriptional maps of 10 human chromosomes at 5-nucleotide resolution [J].
Cheng, J ;
Kapranov, P ;
Drenkow, J ;
Dike, S ;
Brubaker, S ;
Patel, S ;
Long, J ;
Stern, D ;
Tammana, H ;
Helt, G ;
Sementchenko, V ;
Piccolboni, A ;
Bekiranov, S ;
Bailey, DK ;
Ganesh, M ;
Ghosh, S ;
Bell, I ;
Gerhard, DS ;
Gingeras, TR .
SCIENCE, 2005, 308 (5725) :1149-1154
[5]   Antisense transcription and heterochromatin at the DM1 CTG repeats are constrained by CTCF [J].
Cho, DH ;
Thienes, CP ;
Mahoney, SE ;
Analau, E ;
Filippova, GN ;
Tapscott, SJ .
MOLECULAR CELL, 2005, 20 (03) :483-489
[6]   An Architectural Role for a Nuclear Noncoding RNA: NEAT1 RNA Is Essential for the Structure of Paraspeckles [J].
Clemson, Christine M. ;
Hutchinson, John N. ;
Sara, Sergio A. ;
Ensminger, Alexander W. ;
Fox, Archa H. ;
Chess, Andrew ;
Lawrence, Jeanne B. .
MOLECULAR CELL, 2009, 33 (06) :717-726
[7]   Non-coding RNAs: Meet thy masters [J].
Costa, Fabricio F. .
BIOESSAYS, 2010, 32 (07) :599-608
[8]   Long noncoding RNAs in mouse embryonic stem cell pluripotency and differentiation [J].
Dinger, Marcel E. ;
Amaral, Paulo P. ;
Mercer, Tim R. ;
Pang, Ken C. ;
Bruce, Stephen J. ;
Gardiner, Brooke B. ;
Askarian-Amiri, Marjan E. ;
Ru, Kelin ;
Solda, Giulia ;
Simons, Cas ;
Sunkin, Susan M. ;
Crowe, Mark L. ;
Grimmond, Sean M. ;
Perkins, Andrew C. ;
Mattick, John S. .
GENOME RESEARCH, 2008, 18 (09) :1433-1445
[9]   PU.1 expression is modulated by the balance of functional sense and antisense RNAs regulated by a shared cis-regulatory element [J].
Ebralidze, Alexander K. ;
Guibal, Florence C. ;
Steidl, Ulrich ;
Zhang, Pu ;
Lee, Sanghoon ;
Bartholdy, Boris ;
Jorda, Meritxell Alberich ;
Petkova, Victoria ;
Rosenbauer, Frank ;
Huang, Gang ;
Dayaram, Tajhal ;
Klupp, Johanna ;
O'Brien, Karen B. ;
Will, Britta ;
Hoogenkamp, Maarten ;
Borden, Katherine L. B. ;
Bonifer, Constanze ;
Tenen, Daniel G. .
GENES & DEVELOPMENT, 2008, 22 (15) :2085-2092
[10]   Post-transcriptional processing generates a diversity of 5'-modified long and short RNAs [J].
Fejes-Toth, Katalin ;
Sotirova, Vihra ;
Sachidanandam, Ravi ;
Assaf, Gordon ;
Hannon, Gregory J. ;
Kapranov, Philipp ;
Foissac, Sylvain ;
Willingham, Aarron T. ;
Duttagupta, Radha ;
Dumais, Erica ;
Gingeras, Thomas R. .
NATURE, 2009, 457 (7232) :1028-1032