Proposal of 'Candidatus Frankia californiensis', the uncultured symbiont in nitrogen-fixing root nodules of a phylogenetically broad group of hosts endemic to western North America

被引:24
作者
Normand, Philippe [1 ,2 ,3 ,4 ]
Thanh Van Nguyen [5 ]
Battenberg, Kai [6 ]
Berry, Alison M. [6 ]
Vanden Heuvel, Brian [7 ]
Fernandez, Maria P. [1 ,2 ,3 ,4 ]
Pawlowski, Katharina [5 ]
机构
[1] Univ Lyon, F-69622 Lyon, France
[2] Univ Lyon 1, Villeurbanne, France
[3] CNRS, UMR5557, Ecol Microbienne, Villeurbanne, France
[4] INRA, UMR1418, Villeurbanne, France
[5] Stockholm Univ, Dept Ecol Environm & Plant Sci, S-10691 Stockholm, Sweden
[6] Univ Calif Davis, Dept Plant Sci, Davis, CA 95616 USA
[7] Colorado State Univ, Dept Biol, Pueblo, CO 81001 USA
关键词
cluster2; Ceanothus; Cercocarpus; Datisca; Dryas; Purshia; Chamaebatia; endemic; symbiosis; California Floristic Province; 16S RIBOSOMAL-RNA; FINE-STRUCTURE; ACTINORHIZAL HOST; CORIARIA-ARBOREA; GENOME SEQUENCE; ALNUS-GLUTINOSA; SP NOV; CEANOTHUS; NODULATION; PHYLOGENY;
D O I
10.1099/ijsem.0.002147
中图分类号
Q93 [微生物学];
学科分类号
071005 ; 100705 ;
摘要
The genus Frankia comprises a group of nitrogen-fixing actinobacteria that form root-nodule symbioses with perennial dicotyledonous plants in the nitrogen-fixing clade. These bacteria have been characterized phylogenetically and grouped into four clusters (clusters 1-4). Cluster 2 contains mostly uncultured strains that induce nodules on species of the genera Datisca (Datiscaceae), Coriaria (Coriariaceae), Ceanothus (Rhamnaceae) and several genera in the family Rosaceae (Cercocarpus, Chamaebatia, Dryas, Purshia), all of which except members of the genus Coriaria are present within the California Floristic Province (CFP) or neighbouring areas of western North America. Those strains occurring in western North America are genetically very closely related to one another, and genetically distinct from strains characterized from other locales. We hereby propose to create a 'Candidatus Frankia californiensis' species for those cluster 2 strains of the genus Frankia with both high genetic similarity and a geographical distribution in or near the CFP.
引用
收藏
页码:3706 / 3715
页数:10
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