Modular tuning engineering and versatile applications of genetically encoded biosensors

被引:16
作者
Zhang, Jian [1 ]
Pang, Qingxiao [1 ]
Wang, Qi [1 ]
Qi, Qingsheng [1 ,2 ]
Wang, Qian [1 ,2 ]
机构
[1] Shandong Univ, State Key Lab Microbial Technol, Natl Glycoengn Res Ctr, Qingdao, Peoples R China
[2] Chinese Acad Sci, Qingdao Inst Bioenergy & Bioproc Technol, CAS Key Lab Biobased Mat, Qingdao, Peoples R China
基金
中国国家自然科学基金; 国家重点研发计划;
关键词
Genetically encoded biosensors; synthetic biology; function fine-tuning; response curve; input signal extending; output signal; SENSING-ESCHERICHIA-COLI; WHOLE-CELL BIOREPORTER; METABOLIC FLUX CONTROL; TRANSCRIPTION-FACTOR; GENE-EXPRESSION; COMPUTATIONAL DESIGN; PARACOCCUS-DENITRIFICANS; 2-COMPONENT SYSTEM; DIRECTED EVOLUTION; REGULATOR SYSTEM;
D O I
10.1080/07388551.2021.1982858
中图分类号
Q81 [生物工程学(生物技术)]; Q93 [微生物学];
学科分类号
071005 ; 0836 ; 090102 ; 100705 ;
摘要
Genetically encoded biosensors have a diverse range of detectable signals and potential applications in many fields, including metabolism control and high-throughput screening. Their ability to be used in situ with minimal interference to the bioprocess of interest could revolutionize synthetic biology and microbial cell factories. The performance and functions of these biosensors have been extensively studied and have been rapidly improved. We review here current biosensor tuning strategies and attempt to unravel how to obtain ideal biosensor functions through experimental adjustments. Strategies for expanding the biosensor input signals that increases the number of detectable compounds have also been summarized. Finally, different output signals and their practical requirements for biotechnology and biomedical applications and environmental safety concerns have been analyzed. This in-depth review of the responses and regulation mechanisms of genetically encoded biosensors will assist to improve their design and optimization in various application scenarios.
引用
收藏
页码:1010 / 1027
页数:18
相关论文
共 166 条
[71]   Advances of magnetic nanoparticles in environmental application: environmental remediation and (bio)sensors as case studies [J].
Jiang, Bo ;
Lian, Luning ;
Xing, Yi ;
Zhang, Nana ;
Chen, Yating ;
Lu, Pei ;
Zhang, Dayi .
ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH, 2018, 25 (31) :30863-30879
[72]   A whole-cell bioreporter assay for quantitative genotoxicity evaluation of environmental samples [J].
Jiang, Bo ;
Li, Guanghe ;
Xing, Yi ;
Zhang, Dayi ;
Jia, Jianli ;
Cui, Zhisong ;
Luan, Xiao ;
Tang, Hui .
CHEMOSPHERE, 2017, 184 :384-392
[73]   Biosensor libraries harness large classes of binding domains for construction of allosteric transcriptional regulators [J].
Juarez, Javier F. ;
Lecube-Azpeitia, Begona ;
Brown, Stuart L. ;
Johnston, Christopher D. ;
Church, George M. .
NATURE COMMUNICATIONS, 2018, 9
[74]   Development of Transcription Factor-Based Designer Macrolide Biosensors for Metabolic Engineering and Synthetic Biology [J].
Kasey, Christian M. ;
Zerrad, Mounir ;
Li, Yiwei ;
Cropp, T. Ashton ;
Williams, Gavin J. .
ACS SYNTHETIC BIOLOGY, 2018, 7 (01) :227-239
[75]   Doxycycline Inducible Melanogenic Vaccinia Virus as Theranostic Anti-Cancer Agent [J].
Kirscher, Lorenz ;
Dean-Ben, Xose Luis ;
Scadeng, Miriam ;
Zaremba, Angelika ;
Zhang, Qian ;
Kober, Christina ;
Fehm, Thomas Felix ;
Razansky, Daniel ;
Ntziachristos, Vasilis ;
Stritzker, Jochen ;
Szalay, Aladar A. .
THERANOSTICS, 2015, 5 (10) :1045-1057
[76]   A dataset of small molecules triggering transcriptional and translational cellular responses [J].
Koch, Mathilde ;
Pandi, Amir ;
Delepine, Baudoin ;
Faulon, Jean-Loup .
DATA IN BRIEF, 2018, 17 :1374-1378
[77]   An engineered E-coli Nissle improves hyperammonemia and survival in mice and shows dose-dependent exposure in healthy humans [J].
Kurtz, Caroline B. ;
Millet, Yves A. ;
Puurunen, Marja K. ;
Perreault, Myelle ;
Charbonneau, Mark R. ;
Isabella, Vincent M. ;
Kotula, Jonathan W. ;
Antipov, Eugene ;
Dagon, Yossi ;
Denney, William S. ;
Wagner, David A. ;
West, Kip A. ;
Degar, Andrew J. ;
Brennan, Aoife M. ;
Miller, Paul F. .
SCIENCE TRANSLATIONAL MEDICINE, 2019, 11 (475)
[78]   Phosphatase activity tunes two-component system sensor detection threshold [J].
Landry, Brian P. ;
Palanki, Rohan ;
Dyulgyarov, Nikola ;
Hartsough, Lucas A. ;
Tabor, Jeffrey J. .
NATURE COMMUNICATIONS, 2018, 9
[79]   Combinatorial methods for small-molecule placement in computational enzyme design [J].
Lassila, Jonathan Kyle ;
Privett, Heidi K. ;
Allen, Benjamin D. ;
Mayo, Stephen L. .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2006, 103 (45) :16710-16715
[80]   Specificity in two-component signal transduction pathways [J].
Laub, Michael T. ;
Goulian, Mark .
ANNUAL REVIEW OF GENETICS, 2007, 41 :121-145