Isolation and characterization of Tarumizu tick virus: A new coltivirus from Haemaphysalis flava ticks in Japan

被引:28
作者
Fujita, Ryosuke [1 ,2 ,3 ]
Ejiri, Hiroko [1 ,4 ]
Lim, Chang-Kweng [5 ]
Noda, Shinichi [6 ]
Yamauchi, Takeo [7 ]
Watanabe, Mamoru [1 ]
Kobayashi, Daisuke [1 ]
Takayama-Ito, Mutsuyo [5 ]
Murota, Katsunori [1 ,2 ]
Posadas-Herrera, Guillermo [5 ]
Minami, Shohei [8 ]
Kuwata, Ryusei [8 ]
Yamaguchi, Yukie [5 ]
Horiya, Madoka [5 ]
Katayama, Yukie [9 ]
Shimoda, Hiroshi [8 ]
Saijo, Masayuki [5 ]
Maeda, Ken [8 ]
Mizutani, Tetsuya [9 ]
Isawa, Haruhiko [1 ]
Sawabe, Kyoko [1 ,10 ]
机构
[1] Natl Inst Infect Dis, Dept Med Entomol, Shinjuku Ku, 1-23-1 Toyama, Tokyo 1628640, Japan
[2] Japan Agcy Med Res & Dev, Dept Res Promot, Chiyoda Ku, 20F Yomiuri Shimbun Bldg,1-7-1 Otemachi, Tokyo 1000004, Japan
[3] Creat Res Inst, Isotope Imaging Lab, Kita Ku, Kita 21 Nishi 10, Sapporo, Hokkaido 0010021, Japan
[4] Natl Def Med Coll, Natl Def Med Res Inst, Div Infect Dis Epidemiol & Control, 3-2 Namiki, Tokorozawa, Saitama 3598513, Japan
[5] Natl Inst Infect Dis, Dept Virol 1, Shinjuku Ku, 1-23-1 Toyama, Tokyo 1628640, Japan
[6] Kagoshima Univ, Res Ctr Pacif Isl, 1-21-24 Korimoto, Kagoshima 8908580, Japan
[7] Univ Hyogo, Inst Natl & Environm Sci, Museum Nat & Human act, Yayoigaoka 6, Sanda, Hyogo 6691546, Japan
[8] Yamaguchi Univ, Fac Agr, Lab Vet Microbiol, 1677-1 Yoshida, Yamaguchi 7538515, Japan
[9] Tokyo Univ Agr & Technol, Res & Educ Ctr Prevent Global Infect Dis Anim, Fuchu, Tokyo 1838509, Japan
[10] Univ Tokyo, Grad Sch Agr & Life Sci, Dept Agr & Environm Biol, Bunkyo Ku, Yayoi 1-1-1, Tokyo 1138657, Japan
关键词
Arbovirus; Coltivirus; Reoviridae; Tick-borne viruses; Whole-genome analysis; Haemaphysalis flava; FEVER VIRUS; FAMILY REOVIRIDAE; SEQUENCE DETERMINATION; GENUS; GENOME; MEMBER;
D O I
10.1016/j.virusres.2017.09.017
中图分类号
Q93 [微生物学];
学科分类号
071005 ; 100705 ;
摘要
During the course of tick-borne virus surveillance in Japan, three independent isolates of probably the same virus were obtained from three geographically distant populations of the hard tick Haemaphysalis flava. Genome analyses of the three isolates demonstrated that they were closely related but distinct strains of a novel virus, designated Tarumizu tick virus (TarTV), which has a genome of 12 double-stranded RNA segments. The development of the virus-induced cytopathic effects on BHK cells significantly varied according to virus strains. Ten out of 12 segments of TarTV appeared to encode putative orthologs or functional equivalents of viral proteins of Colorado tick fever virus (CTFV) and Eyach virus, suggesting that TarTV is the third member of the genus Coltivirus in the family Reoviridae. This was supported by the facts that the 5'- and 3'-terminal consensus sequences of coltivirus genomes were found also in TarTV genome, and segment 9 of TarTV had sequence and structural features that may mediate a stop codon read-through as observed in that of CTFV. However, segment 7 and 10 of TarTV had no significant sequence similarities to any other proteins of known coltiviruses. Electron microscopic analysis demonstrated that TarTV particle had a non-enveloped bilayer icosahedral structure, and viral inclusion bodies were formed in infected cells. TarTV could infect and replicate in several mammalian cell lines tested, but show no clinical symptoms in intracerebrally inoculated mice. Taken together, our findings provide new insights into genetic diversity and evolution of the genus Coltivirus.
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页码:131 / 140
页数:10
相关论文
共 24 条
[1]   The MPI bioinformatics Toolkit as an integrative platform for advanced protein sequence and structure analysis [J].
Alva, Vikram ;
Nam, Seung-Zin ;
Soeding, Johannes ;
Lupas, Andrei N. .
NUCLEIC ACIDS RESEARCH, 2016, 44 (W1) :W410-W415
[2]   Strategies for the sequence determination of viral dsRNA genomes [J].
Attoui, H ;
Billoir, F ;
Cantaloube, JF ;
Biagini, P ;
de Micco, P ;
de Lamballerie, X .
JOURNAL OF VIROLOGICAL METHODS, 2000, 89 (1-2) :147-158
[3]   Coltiviruses and seadornaviruses in North America, Europe, and Asia [J].
Attoui, H ;
Jaafar, FM ;
de Micco, P ;
de Lamballerie, X .
EMERGING INFECTIOUS DISEASES, 2005, 11 (11) :1673-1679
[4]   Genus Coltivirus (family Reoviridae):: genomic and morphologic characterization of Old World and New World viruses [J].
Attoui, H ;
Jaafar, FM ;
Biagini, P ;
Cantaloube, JF ;
de Micco, P ;
Murphy, FA ;
de Lamballerie, X .
ARCHIVES OF VIROLOGY, 2002, 147 (03) :533-561
[5]   Sequence determination and analysis of the full-length genome of Colorado tick fever virus, the type species of genus Coltivirus (family Reoviridae) [J].
Attoui, H ;
Billoir, F ;
Biagini, P ;
Cantaloube, JF ;
de Chesse, R ;
de Micco, P ;
de Lamballerie, X .
BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS, 2000, 273 (03) :1121-1125
[6]   WebLogo: A sequence logo generator [J].
Crooks, GE ;
Hon, G ;
Chandonia, JM ;
Brenner, SE .
GENOME RESEARCH, 2004, 14 (06) :1188-1190
[7]   Genetic and biological characterization of Muko virus, a new distinct member of the species Great Island virus (genus Orbivirus, family Reoviridae), isolated from ixodid ticks in Japan [J].
Ejiri, Hiroko ;
Lim, Chang-Kweng ;
Isawa, Haruhiko ;
Kuwata, Ryusei ;
Kobayashi, Daisuke ;
Yamaguchi, Yukie ;
Takayama-Ito, Mutsuyo ;
Kinoshita, Hitomi ;
Kakiuchi, Satsuki ;
Horiya, Madoka ;
Kotaki, Akira ;
Takasaki, Tomohiko ;
Maeda, Ken ;
Hayashi, Toshihiko ;
Sasaki, Toshinori ;
Kobayashi, Mutsuo ;
Saijo, Masayuki ;
Sawabe, Kyoko .
ARCHIVES OF VIROLOGY, 2015, 160 (12) :2965-2977
[8]   Fast and accurate automatic structure prediction with HHpred [J].
Hildebrand, Andrea ;
Remmert, Michael ;
Biegert, Andreas ;
Soeding, Johannes .
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS, 2009, 77 :128-132
[9]   Detection of Colorado tick fever virus by using reverse transcriptase PCR and application of the technique in laboratory diagnosis [J].
Johnson, AJ ;
Karabatsos, N ;
Lanciotti, RS .
JOURNAL OF CLINICAL MICROBIOLOGY, 1997, 35 (05) :1203-1208
[10]   THE RAPID GENERATION OF MUTATION DATA MATRICES FROM PROTEIN SEQUENCES [J].
JONES, DT ;
TAYLOR, WR ;
THORNTON, JM .
COMPUTER APPLICATIONS IN THE BIOSCIENCES, 1992, 8 (03) :275-282