Lipophilicity of Coarse-Grained Cholesterol Models

被引:19
作者
Fornasier, Franccesca [1 ]
Souza, Lucas M. P. [1 ]
Souza, Felipe R. [1 ]
Reynaud, Franceline [2 ,3 ]
Pimentel, Andre S. [1 ]
机构
[1] Pontificia Univ Catolica Rio de Janeiro, Dept Quim, BR-22453900 Rio De Janeiro, RJ, Brazil
[2] Univ Paris Saclay, Inst Galien Paris Sud, CNRS 8612, F-92290 Chatenay Malabry, Malabry, France
[3] Univ Fed Rio de Janeiro, Fac Farm, BR-21941902 Rio De Janeiro, RJ, Brazil
基金
巴西圣保罗研究基金会;
关键词
OCTANOL/WATER PARTITION-COEFFICIENTS; MOLECULAR-DYNAMICS SIMULATIONS; FORCE-FIELD; HISTOGRAM ANALYSIS; NEURAL NETWORKS; LIPID MODELS; PREDICTION; MEMBRANES; AMBER; VALIDATION;
D O I
10.1021/acs.jcim.9b00830
中图分类号
R914 [药物化学];
学科分类号
100701 ;
摘要
The lipophilicity of cholesterol was investigated by using coarse-grained molecular dynamics and umbrella sampling. The previous coarse-grained cholesterol models in the literature are more hydrophobic than our model. The Gibbs free energy of transferring cholesterol from the octanol phase to water phase (Delta G(o/w)) was 11.88 +/- 0.08 kcal mol(-1), and the octanol-water partitioning coefficient (logP) was estimated to be 8.72 +/- 0.06. The latter is in agreement with the logP values found by bioinformatics, which are standard methods to predict the lipophilicity, giving excellent octanol/water partitioning coefficients compared with experimental ones for different molecules. We also performed the first experimentally direct measurement of this important property for cholesterol. The experimental octanol/water partitioning coefficient of cholesterol was measured to be 8.86 +/- 0.79, which is in excellent agreement with our calculated logP value from our parametrized coarse-grained cholesterol model. This shows the significance of systematic optimization of the lipophilicity for developing coarse-grain models of important biomolecules with complicated molecular structures and hydrophobic character like cholesterol.
引用
收藏
页码:569 / 577
页数:9
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