Use of Bayesian Inference in Crystallographic Structure Refinement via Full Diffraction Profile Analysis

被引:22
作者
Fancher, Chris M. [1 ]
Han, Zhen [2 ]
Levin, Igor [3 ]
Page, Katharine [4 ]
Reich, Brian J. [2 ]
Smith, Ralph C. [5 ]
Wilson, Alyson G. [2 ]
Jones, Jacob L. [1 ]
机构
[1] North Carolina State Univ, Dept Mat Sci & Engn, Raleigh, NC 27695 USA
[2] North Carolina State Univ, Dept Stat, Raleigh, NC 27695 USA
[3] NIST, Mat Measurement Sci Div, Gaithersburg, MD 20899 USA
[4] Oak Ridge Natl Lab, Neutron Scattering Sci Directorate, Oak Ridge, TN 37831 USA
[5] North Carolina State Univ, Dept Math, Raleigh, NC 27695 USA
来源
SCIENTIFIC REPORTS | 2016年 / 6卷
基金
美国国家科学基金会;
关键词
CRYSTAL-STRUCTURE DETERMINATION; POWDER; STATISTICS;
D O I
10.1038/srep31625
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
A Bayesian inference method for refining crystallographic structures is presented. The distribution of model parameters is stochastically sampled using Markov chain Monte Carlo. Posterior probability distributions are constructed for all model parameters to properly quantify uncertainty by appropriately modeling the heteroskedasticity and correlation of the error structure. The proposed method is demonstrated by analyzing a National Institute of Standards and Technology silicon standard reference material. The results obtained by Bayesian inference are compared with those determined by Rietveld refinement. Posterior probability distributions of model parameters provide both estimates and uncertainties. The new method better estimates the true uncertainties in the model as compared to the Rietveld method.
引用
收藏
页数:12
相关论文
共 38 条
  • [1] Automatic structure determination from powder data with EXPO2004
    Altomare, A
    Caliandro, R
    Camalli, M
    Cuocci, C
    Giacovazzo, C
    Moliterni, AGG
    Rizzi, R
    [J]. JOURNAL OF APPLIED CRYSTALLOGRAPHY, 2004, 37 : 1025 - 1028
  • [2] A general Monte Carlo approach to structure solution from powder-diffraction data: Application to poly(ethylene oxide)(3):LiN(SO2CF3)(2)
    Andreev, YG
    Lightfoot, P
    Bruce, PG
    [J]. JOURNAL OF APPLIED CRYSTALLOGRAPHY, 1997, 30 : 294 - 305
  • [3] Armstrong N., 2004, ADV XRAY ANAL, V48, P59
  • [4] Armstrong N., 2004, ANN COND MATT MAT M, V1, P8
  • [5] Armstrong W., 2004, J RES NATL INST STAN, V109, P166
  • [6] Size-strain line-broadening analysis of the ceria round-robin sample
    Balzar, D
    Audebrand, N
    Daymond, MR
    Fitch, A
    Hewat, A
    Langford, JI
    Le Bail, A
    Louër, D
    Masson, O
    McCowan, CN
    Popa, NC
    Stephens, PW
    Toby, BH
    [J]. JOURNAL OF APPLIED CRYSTALLOGRAPHY, 2004, 37 : 911 - 924
  • [7] Bayesian approach to the Rietveld refinement of Poisson-distributed powder diffraction data
    Bergmann, J.
    Monecke, T.
    [J]. JOURNAL OF APPLIED CRYSTALLOGRAPHY, 2011, 44 : 13 - 16
  • [8] The problem with determining atomic structure at the nanoscale
    Billinge, Simon J. L.
    Levin, Igor
    [J]. SCIENCE, 2007, 316 (5824) : 561 - 565
  • [9] Black D. R., STANDARD REFERENCE M
  • [10] Certification of NIST Standard Reference Material 640d
    Black, David R.
    Windover, Donald
    Henins, Albert
    Gil, David
    Filliben, James
    Cline, James P.
    [J]. POWDER DIFFRACTION, 2010, 25 (02) : 187 - 190