Subquadratic Non-adaptive Threshold Group Testing

被引:0
作者
De Marco, Gianluca [1 ]
Jurdzinski, Tomasz [2 ]
Rozanski, Michal [2 ]
Stachowiak, Grzegorz [2 ]
机构
[1] Univ Salerno, Dipartimento Informat, Fisciano, Italy
[2] Univ Wroclaw, Inst Comp Sci, Wroclaw, Poland
来源
FUNDAMENTALS OF COMPUTATION THEORY, FCT 2017 | 2017年 / 10472卷
关键词
Group testing; Threshold group testing; Non-adaptive strategies; Randomized algorithms; DISTRIBUTED BROADCAST; ALGORITHMS; RESOLUTION;
D O I
10.1007/978-3-662-55751-8_15
中图分类号
TP301 [理论、方法];
学科分类号
081202 ;
摘要
We consider threshold group testing - a generalization of a well known and thoroughly examined problem of combinatorial group testing. In the classical setting, the goal is to identify a set of positive individuals in a population, by performing tests on pools of elements. The output of each test is an answer to the question: is there at least one positive element inside a query set Q? The threshold group testing is a natural generalization of this classical setting which arises when the answer to a test is positive if at least t > 0 elements under test are positive. We show that there exists a testing strategy for the threshold group testing consisting of O(d(3/2) log(N/d)) tests, for d positive items in a population of size N. For any value of the threshold t, we also provide a lower bound of order Omega (min{(d/t)(2), N/t}). Our subquadratic bound shows a complexity separation with the classical group testing (which corresponds to t = 1) where Omega(d(2) log(d) N) tests are needed [25]. Next, we introduce a further generalization, the multi-threshold group testing problem. In this setting, we have a set of s > 0 thresholds, t(1), t(2), ... , t(s). The output of each test is an integer between 0 and s which corresponds to which thresholds get passed by the number of positives in the queried pool. Here, one may be interested in minimizing not only the number of tests, but also the number of thresholds which is related to the accuracy of the tests. We show the existence of two strategies for this problem. The first one of size O(d3/2 log(N/d)) is an extension of the above-mentioned result. The second strategy is more general and works for a range of parameters. As a consequence, we show that O(d(2)/t log(N/d)) tests are sufficient for t <= d/2. Both strategies use respectively O(root d) and O(root t) thresholds.
引用
收藏
页码:177 / 189
页数:13
相关论文
共 34 条
  • [1] Optimal Monotone Encodings
    Alon, Noga
    Hod, Rani
    [J]. IEEE TRANSACTIONS ON INFORMATION THEORY, 2009, 55 (03) : 1343 - 1353
  • [2] Threshold Group Testing on Inhibitor Model
    Chang, Huilan
    Fu, Hung-Lin
    Shih, Chih-Huai
    [J]. JOURNAL OF COMPUTATIONAL BIOLOGY, 2013, 20 (06) : 464 - 470
  • [3] Nonadaptive algorithms for threshold group testing
    Chen, Hong-Bin
    Fu, Hung-Lin
    [J]. DISCRETE APPLIED MATHEMATICS, 2009, 157 (07) : 1581 - 1585
  • [4] Improved Constructions for Non-adaptive Threshold Group Testing
    Cheraghchi, Mahdi
    [J]. ALGORITHMICA, 2013, 67 (03) : 384 - 417
  • [5] Naming a Channel with Beeps
    Chlebus, Bogdan S.
    De Marco, Gianluca
    Talo, Muhammed
    [J]. FUNDAMENTA INFORMATICAE, 2017, 153 (03) : 199 - 219
  • [6] Scalable wake-up of multi-channel single-hop radio networks
    Chlebus, Bogdan S.
    De Marco, Gianluca
    Kowalski, Dariusz R.
    [J]. THEORETICAL COMPUTER SCIENCE, 2016, 615 : 23 - 44
  • [7] Chlebus BS, 2014, LECT NOTES COMPUT SC, V8878, P186, DOI 10.1007/978-3-319-14472-6_13
  • [8] Chlebus BS, 2005, LECT NOTES COMPUT SC, V3623, P270, DOI 10.1007/11537311_24
  • [9] Fast broadcasting and gossiping in radio networks
    Chrobak, M
    Gasieniec, L
    Rytter, W
    [J]. 41ST ANNUAL SYMPOSIUM ON FOUNDATIONS OF COMPUTER SCIENCE, PROCEEDINGS, 2000, : 575 - 581
  • [10] Distributed broadcast in radio networks of unknown topology
    Clementi, AEF
    Monti, A
    Silvestri, R
    [J]. THEORETICAL COMPUTER SCIENCE, 2003, 302 (1-3) : 337 - 364