A DNA-derived phage nose using machine learning and artificial neural processing for diagnosing lung cancer

被引:24
作者
Lee, Jong-Min [1 ,9 ]
Choi, Eun Jeong [1 ]
Chung, Jae Heun [2 ,8 ]
Lee, Ki-wook [3 ]
Lee, Yujin [4 ]
Kim, Ye-Ji [4 ]
Kim, Won-Geun [1 ]
Yoon, Seong Hoon [2 ,8 ]
Seol, Hee Yun [2 ,8 ]
Devaraj, Vasanthan [1 ]
Ha, Jong Seong [5 ]
Lee, Donghan [6 ]
Kwon, Sang-Mo [5 ]
Kim, Yun Seong [2 ,8 ]
Chang, Chulhun L. [7 ]
Oh, Jin-Woo [1 ,3 ]
机构
[1] Pusan Natl Univ, BioIT Fus Technol Res Inst, Busan 46241, South Korea
[2] Pusan Natl Univ, Yangsan Hosp, Coll Med, Dept Internal Med, Yangsan 50612, South Korea
[3] Univ Illinois, Dept Elect & Comp Engn, Urbana, IL 61801 USA
[4] Pusan Natl Univ, Dept Nano Fus Technol, Busan 46241, South Korea
[5] Pusan Natl Univ, Sch Med, Dept Physiol, Yangsan 50612, South Korea
[6] Chungnam Natl Univ, Dept Phys, Daejeon 34134, South Korea
[7] Pusan Natl Univ, Coll Med, Dept Lab Med, Yangsan 50612, South Korea
[8] Pusan Natl Univ, Res Inst Convergence Biomed Sci & Technol, Yangsan Hosp, Yangsan 50612, South Korea
[9] Hallym Univ, Sch Nano Convergence Technol, Chunchon 24252, Gangwon Do, South Korea
基金
新加坡国家研究基金会;
关键词
Bioelectronic nose; Bacteriophage; Genetic engineering; Lung cancer; Surface chemistry; SENSOR;
D O I
10.1016/j.bios.2021.113567
中图分类号
Q6 [生物物理学];
学科分类号
071011 ;
摘要
There is a growing interest in electronic nose-based diagnostic systems that are fast and portable. However, existing technologies are suitable only for operation in the laboratory, making them difficult to apply in a rapid, non-face-to-face, and field-suitable manner. Here, we demonstrate a DNA-derived phage nose (D2pNose) as a portable respiratory disease diagnosis system requiring no pretreatment. D2pNose was produced based on phage colour films implanted with DNA sequences from mammalian olfactory receptor cells, and as a result, it possesses the comprehensive reactivity of these cells. The manipulated surface chemistry of the genetically engineered phages was verified through a correlation analysis between the calculated and the experimentally measured reactivity. Breaths from 31 healthy subjects and 31 lung cancer patients were collected and exposed to D2pNose without pretreatment. With the help of deep learning and neural pattern separation, D2pNose has achieved a diagnostic success rate of over 75% and a classification success rate of over 86% for lung cancer based on raw human breath. Based on these results, D2pNose can be expected to be directly applicable to other respiratory diseases.
引用
收藏
页数:7
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