Diverse evolutionary roots and mechanistic variations of the CRISPR-Cas systems

被引:483
作者
Mohanraju, Prarthana [1 ]
Makarova, Kira S. [2 ]
Zetsche, Bernd [3 ]
Zhang, Feng [3 ]
Koonin, Eugene V. [2 ]
van der Oost, John [1 ]
机构
[1] Wageningen Univ, Dept Agrotechnol & Food Sci, Microbiol Lab, NL-6703 HB Wageningen, Netherlands
[2] Natl Lib Med, Natl Ctr Biotechnol Informat, Bethesda, MD 20894 USA
[3] Broad Inst & Harvard, Cambridge, MA 02142 USA
关键词
GUIDED SURVEILLANCE COMPLEX; ADAPTIVE IMMUNE-SYSTEMS; GENOME-EDITING SPECIFICITY; RNA-SILENCING COMPLEX; HUMAN-CELLS; SPACER ACQUISITION; CRYSTAL-STRUCTURE; FOREIGN DNA; ESCHERICHIA-COLI; STRUCTURAL BASIS;
D O I
10.1126/science.aad5147
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
Adaptive immunity had been long thought of as an exclusive feature of animals. However, the discovery of the CRISPR-Cas defense system, present in almost half of prokaryotic genomes, proves otherwise. Because of the everlasting parasite-host arms race, CRISPR-Cas has rapidly evolved through horizontal transfer of complete loci or individual modules, resulting in extreme structural and functional diversity. CRISPR-Cas systems are divided into two distinct classes that each consist of three types and multiple subtypes. We discuss recent advances in CRISPR-Cas research that reveal elaborate molecular mechanisms and provide for a plausible scenario of CRISPR-Cas evolution. We also briefly describe the latest developments of a wide range of CRISPR-based applications.
引用
收藏
页数:12
相关论文
共 166 条
[1]   C2c2 is a single-component programmable RNA-guided RNA-targeting CRISPR effector [J].
Abudayyeh, Omar O. ;
Gootenberg, Jonathan S. ;
Konermann, Silvana ;
Joung, Julia ;
Slaymaker, Ian M. ;
Cox, David B. T. ;
Shmakov, Sergey ;
Makarova, Kira S. ;
Semenova, Ekaterina ;
Minakhin, Leonid ;
Severinov, Konstantin ;
Regev, Aviv ;
Lander, Eric S. ;
Koonin, Eugene V. ;
Zhang, Feng .
SCIENCE, 2016, 353 (6299)
[2]   CRISPR-Cas adaptation: insights into the mechanism of action [J].
Amitai, Gil ;
Sorek, Rotem .
NATURE REVIEWS MICROBIOLOGY, 2016, 14 (02) :67-76
[3]   Structural basis of PAM-dependent target DNA recognition by the Cas9 endonuclease [J].
Anders, Carolin ;
Niewoehner, Ole ;
Duerst, Alessia ;
Jinek, Martin .
NATURE, 2014, 513 (7519) :569-+
[4]   Detection and characterization of spacer integration intermediates in type I-E CRISPR-Cas system [J].
Arslan, Zihni ;
Hermanns, Veronica ;
Wurm, Reinhild ;
Wagner, Rolf ;
Pul, Uemit .
NUCLEIC ACIDS RESEARCH, 2014, 42 (12) :7884-7893
[5]   CRISPR provides acquired resistance against viruses in prokaryotes [J].
Barrangou, Rodolphe ;
Fremaux, Christophe ;
Deveau, Helene ;
Richards, Melissa ;
Boyaval, Patrick ;
Moineau, Sylvain ;
Romero, Dennis A. ;
Horvath, Philippe .
SCIENCE, 2007, 315 (5819) :1709-1712
[6]   CRISPR-Cas Systems: Prokaryotes Upgrade to Adaptive Immunity [J].
Barrangou, Rodolphe ;
Marraffini, Luciano A. .
MOLECULAR CELL, 2014, 54 (02) :234-244
[7]   Structural Model of a CRISPR RNA-Silencing Complex Reveals the RNA-Target Cleavage Activity in Cmr4 [J].
Benda, Christian ;
Ebert, Judith ;
Scheltema, Richard A. ;
Schiller, Herbert B. ;
Baumgaertner, Marc ;
Bonneau, Fabien ;
Mann, Matthias ;
Conti, Elena .
MOLECULAR CELL, 2014, 56 (01) :43-54
[8]   Exploiting CRISPR-Cas nucleases to produce sequence-specific antimicrobials [J].
Bikard, David ;
Euler, Chad W. ;
Jiang, Wenyan ;
Nussenzweig, Philip M. ;
Goldberg, Gregory W. ;
Duportet, Xavier ;
Fischetti, Vincent A. ;
Marraffini, Luciano A. .
NATURE BIOTECHNOLOGY, 2014, 32 (11) :1146-1150
[9]   Programmable repression and activation of bacterial gene expression using an engineered CRISPR-Cas system [J].
Bikard, David ;
Jiang, Wenyan ;
Samai, Poulami ;
Hochschild, Ann ;
Zhang, Feng ;
Marraffini, Luciano A. .
NUCLEIC ACIDS RESEARCH, 2013, 41 (15) :7429-7437
[10]   Two Distinct DNA Binding Modes Guide Dual Roles of a CRISPR-Cas Protein Complex [J].
Blosser, Timothy R. ;
Loeff, Luuk ;
Westra, Edze R. ;
Vlot, Marnix ;
Kunne, Tim ;
Sobota, Malgorzata ;
Dekker, Cees ;
Brouns, Stan J. J. ;
Joo, Chirlmin .
MOLECULAR CELL, 2015, 58 (01) :60-70