Electrostatic interactions contribute to the control of intramolecular thiol-disulfide isomerization in a protein

被引:5
|
作者
Maag, Denis [1 ]
Putzu, Marina [1 ]
Gomez-Flores, Claudia L. [1 ]
Graeter, Frauke [2 ]
Elstner, Marcus [1 ,3 ]
Kubar, Tomas [1 ]
机构
[1] Karlsruhe Inst Technol KIT, Inst Phys Chem, D-76131 Karlsruhe, Germany
[2] Heidelberg Inst Theoret Studies, D-69118 Heidelberg, Germany
[3] Karlsruhe Inst Technol KIT, Inst Biol Interfaces IBG 2, D-76131 Karlsruhe, Germany
关键词
MOLECULAR-DYNAMICS; INTERCHANGE; REACTIVITY; IMPLEMENTATION; ENVIRONMENTS; MECHANISM; KINETICS; GROMACS; DFTB3; BOND;
D O I
10.1039/d1cp03129e
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
The roles of structural factors and of electrostatic interactions with the environment on the outcome of thiol-disulfide exchange reactions were investigated in a mutated immunoglobulin domain (I27*) under mechanical stress. An extensive ensemble of molecular dynamics trajectories was generated by means of QM/MM simulations for a total sampling of 5.7 mu s. A significant number of thiol-disulfide exchanges were observed, and the Cys32 thiolate preferred to attack Cys55 over Cys24, in agreement with previous experimental and computational studies. The structural features as well as electronic structures of the thiol-disulfide system along the reaction were analyzed, as were the electrostatic interactions with the environment. The previous findings of better accessibility of Cys55 were confirmed. Additionally, the reaction was found to be directed by the electrostatic interactions of the involved sulfur atoms with the molecular environment. The relationships of atomic charges, which stem from the electrostatic interactions, lead to the kinetic preference of the attack on Cys55. Further, QM/MM metadynamics simulations of thiol-disulfide exchange in a small model system with varied artificial external electric potentials revealed changes in reaction kinetics of the same magnitude as in I27*. Therefore, the electrostatic interactions are confirmed to play a role in the regioselectivity of the thiol-disulfide exchange reactions in the protein.
引用
收藏
页码:26366 / 26375
页数:10
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