Site-resolved measurement of water-protein interactions by solution NMR

被引:206
作者
Nucci, Nathaniel V. [1 ,2 ]
Pometun, Maxim S. [1 ,2 ]
Wand, A. Joshua [1 ,2 ]
机构
[1] Univ Penn, Johnson Res Fdn, Philadelphia, PA 19104 USA
[2] Univ Penn, Dept Biochem & Biophys, Philadelphia, PA 19104 USA
基金
美国国家卫生研究院; 美国国家科学基金会;
关键词
REVERSE MICELLE ENCAPSULATION; SPECTRAL DENSITY-FUNCTIONS; LOW-VISCOSITY FLUIDS; HIGH-RESOLUTION NMR; CROSS-RELAXATION; ROTATING-FRAME; HETERONUCLEAR NMR; BACKBONE DYNAMICS; UBIQUITIN SYSTEM; SPIN RELAXATION;
D O I
10.1038/nsmb.1955
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
The interactions of biological macromolecules with water are fundamental to their structure, dynamics and function. Historically, characterization of the location and residence times of hydration waters of proteins in solution has been quite difficult. Confining proteins within the nanoscale interior of a reverse micelle slows water dynamics, allowing global protein-water interactions to be detected using nuclear magnetic resonance techniques. Complications that normally arise from hydrogen exchange and long-range dipolar coupling are overcome by the nature of the reverse micelle medium. Characterization of the hydration of ubiquitin demonstrates that encapsulation within a reverse micelle allows detection of dozens of hydration waters. Comparison of nuclear Overhauser effects obtained in the laboratory and rotating frames indicate a considerable range of hydration water dynamics is present on the protein surface. In addition, an unprecedented clustering of different hydration-dynamics classes of sites is evident.
引用
收藏
页码:245 / U315
页数:6
相关论文
共 57 条
[1]   SYNTHETIC, STRUCTURAL AND BIOLOGICAL STUDIES OF THE UBIQUITIN SYSTEM - CHEMICALLY SYNTHESIZED AND NATIVE UBIQUITIN FOLD INTO IDENTICAL 3-DIMENSIONAL STRUCTURES [J].
ALEXEEV, D ;
BURY, SM ;
TURNER, MA ;
OGUNJOBI, OM ;
MUIR, TW ;
RAMAGE, R ;
SAWYER, L .
BIOCHEMICAL JOURNAL, 1994, 299 :159-163
[2]  
[Anonymous], 2002, PYMOL MOL GRAPHICS S
[3]   Validation of protein structure from preparations of encapsulated proteins dissolved in low viscosity fluids [J].
Babu, CR ;
Flynn, PF ;
Wand, AJ .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2001, 123 (11) :2691-2692
[4]   Direct access to the cooperative substructure of proteins and the protein ensemble via cold denaturation [J].
Babu, CR ;
Hilser, VJ ;
Wand, AJ .
NATURE STRUCTURAL & MOLECULAR BIOLOGY, 2004, 11 (04) :352-357
[5]   Water dynamics in the hydration layer around proteins and micelles [J].
Bagchi, B .
CHEMICAL REVIEWS, 2005, 105 (09) :3197-3219
[6]   Water as an active constituent in cell biology [J].
Ball, Philip .
CHEMICAL REVIEWS, 2008, 108 (01) :74-108
[7]   Internal pH indicators for biomolecular NMR [J].
Baryshnikova, Olga K. ;
Williams, Thomas C. ;
Sykes, Brian D. .
JOURNAL OF BIOMOLECULAR NMR, 2008, 41 (01) :5-7
[8]   PRACTICAL ASPECTS OF TWO-DIMENSIONAL TRANSVERSE NOE SPECTROSCOPY [J].
BAX, A ;
DAVIS, DG .
JOURNAL OF MAGNETIC RESONANCE, 1985, 63 (01) :207-213
[9]   COMPARISON OF DIFFERENT MODES OF 2-DIMENSIONAL REVERSE-CORRELATION NMR FOR THE STUDY OF PROTEINS [J].
BAX, A ;
IKURA, M ;
KAY, LE ;
TORCHIA, DA ;
TSCHUDIN, R .
JOURNAL OF MAGNETIC RESONANCE, 1990, 86 (02) :304-318
[10]   STRUCTURE DETERMINATION OF A TETRASACCHARIDE - TRANSIENT NUCLEAR OVERHAUSER EFFECTS IN THE ROTATING FRAME [J].
BOTHNERBY, AA ;
STEPHENS, RL ;
LEE, JM ;
WARREN, CD ;
JEANLOZ, RW .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 1984, 106 (03) :811-813