Clustal W and clustal X version 2.0

被引：24182
作者：
Larkin, M. A.
Blackshields, G.
Brown, N. P.
Chenna, R.
McGettigan, P. A.
McWilliam, H.
Valentin, F.
Wallace, I. M.
Wilm, A.
Lopez, R.
Thompson, J. D.
Gibson, T. J.
Higgins, D. G. [1 ]
机构：
[1] Univ Coll Dublin, Conway Inst Biomol & Biomed Res, Dublin 4, Ireland
[2] Inst Genet & Biol Mol & Cellulaire, Lab Biol & Genom Struct, Illkirch Graffenstaden, France
[3] European Mol Biol Lab, D-69117 Heidelberg, Germany
[4] European Bioinformat Inst, EMBL Outstn, Cambridge CB10 1SD, England
来源：
BIOINFORMATICS | 2007年 / 23卷 / 21期
基金：
爱尔兰科学基金会;
关键词：
D O I：
10.1093/bioinformatics/btm404
中图分类号：
Q5 [生物化学];
学科分类号：
071010 ; 081704 ;
摘要：
Summary: The Clustal W and Clustal X multiple sequence alignment programs have been completely rewritten in C. This will facilitate the further development of the alignment algorithms in the future and has allowed proper porting of the programs to the latest versions of Linux, Macintosh and Windows operating systems.
引用
收藏
页码：2947 / 2948
页数：2
相关论文
共 10 条
[1]   MUSCLE: multiple sequence alignment with high accuracy and high throughput [J].
Edgar, RC .
NUCLEIC ACIDS RESEARCH, 2004, 32 (05) :1792-1797
[2]  
HIGGINS DG, 1992, COMPUT APPL BIOSCI, V8, P189
[3]   CLUSTAL - A PACKAGE FOR PERFORMING MULTIPLE SEQUENCE ALIGNMENT ON A MICROCOMPUTER [J].
HIGGINS, DG ;
SHARP, PM .
GENE, 1988, 73 (01) :237-244
[4]  
HIGGINS DG, 1989, COMPUT APPL BIOSCI, V5, P151
[5]   MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform [J].
Katoh, K ;
Misawa, K ;
Kuma, K ;
Miyata, T .
NUCLEIC ACIDS RESEARCH, 2002, 30 (14) :3059-3066
[6]   T-Coffee: A novel method for fast and accurate multiple sequence alignment [J].
Notredame, C ;
Higgins, DG ;
Heringa, J .
JOURNAL OF MOLECULAR BIOLOGY, 2000, 302 (01) :205-217
[7]   THE EMBL NETWORK FILE SERVER [J].
STOEHR, PJ ;
OMOND, RA .
NUCLEIC ACIDS RESEARCH, 1989, 17 (16) :6763-6763
[8]   BAliBASE: a benchmark alignment database for the evaluation of multiple alignment programs [J].
Thompson, JD ;
Plewniak, F ;
Poch, O .
BIOINFORMATICS, 1999, 15 (01) :87-88
[9]   The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools [J].
Thompson, JD ;
Gibson, TJ ;
Plewniak, F ;
Jeanmougin, F ;
Higgins, DG .
NUCLEIC ACIDS RESEARCH, 1997, 25 (24) :4876-4882
[10]   CLUSTAL-W - IMPROVING THE SENSITIVITY OF PROGRESSIVE MULTIPLE SEQUENCE ALIGNMENT THROUGH SEQUENCE WEIGHTING, POSITION-SPECIFIC GAP PENALTIES AND WEIGHT MATRIX CHOICE [J].
THOMPSON, JD ;
HIGGINS, DG ;
GIBSON, TJ .
NUCLEIC ACIDS RESEARCH, 1994, 22 (22) :4673-4680
1