Genome Sequence of Janthinobacterium sp Strain PAMC 25724, Isolated from Alpine Glacier Cryoconite

被引：28
作者：
Kim, Su Jin [2 ]
Shin, Seung Chul [1 ]
Hong, Soon Gyu [1 ]
Lee, Yung Mi [1 ]
Lee, Hyoungseok [1 ]
Lee, Jungeun [1 ]
Choi, In-Geol [2 ]
Park, Hyun [1 ]
机构：
[1] Korea Polar Res Inst, Inchon, South Korea
[2] Korea Univ, Coll Life Sci & Biotechnol, Seoul, South Korea
来源：
JOURNAL OF BACTERIOLOGY | 2012年 / 194卷 / 08期
关键词：
LIVIDUM; IDENTIFICATION;
D O I：
10.1128/JB.00096-12
中图分类号：
Q93 [微生物学];
学科分类号：
071005 ; 100705 ;
摘要：
The draft genome of Janthinobacterium sp. strain PAMC 25724, which is a violacein-producing psychrotolerant bacterium, was determined. The strain was isolated from glacier cryoconite of the Alps mountain permafrost region. The sequence will allow identification and characterization of the genetic determination of its cold-adaptive properties.
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收藏
页码：2096 / 2096
页数：1
相关论文
共 8 条
  • [1] The RAST server: Rapid annotations using subsystems technology
    Aziz, Ramy K.
    Bartels, Daniela
    Best, Aaron A.
    DeJongh, Matthew
    Disz, Terrence
    Edwards, Robert A.
    Formsma, Kevin
    Gerdes, Svetlana
    Glass, Elizabeth M.
    Kubal, Michael
    Meyer, Folker
    Olsen, Gary J.
    Olson, Robert
    Osterman, Andrei L.
    Overbeek, Ross A.
    McNeil, Leslie K.
    Paarmann, Daniel
    Paczian, Tobias
    Parrello, Bruce
    Pusch, Gordon D.
    Reich, Claudia
    Stevens, Rick
    Vassieva, Olga
    Vonstein, Veronika
    Wilke, Andreas
    Zagnitko, Olga
    [J]. BMC GENOMICS, 2008, 9 (1)
  • [2] Amphibian Chemical Defense: Antifungal Metabolites of the Microsymbiont Janthinobacterium lividum on the Salamander Plethodon cinereus
    Brucker, Robert M.
    Harris, Reid N.
    Schwantes, Christian R.
    Gallaher, Thomas N.
    Flaherty, Devon C.
    Lam, Brianna A.
    Minbiole, Kevin P. C.
    [J]. JOURNAL OF CHEMICAL ECOLOGY, 2008, 34 (11) : 1422 - 1429
  • [3] Improved microbial gene identification with GLIMMER
    Delcher, AL
    Harmon, D
    Kasif, S
    White, O
    Salzberg, SL
    [J]. NUCLEIC ACIDS RESEARCH, 1999, 27 (23) : 4636 - 4641
  • [4] JANTHINOCIN-A, JANTHINOCIN-B AND JANTHINOCIN-C, NOVEL PEPTIDE LACTONE ANTIBIOTICS PRODUCED BY JANTHINOBACTERIUM-LIVIDUM .2. STRUCTURE ELUCIDATION
    JOHNSON, JH
    TYMIAK, AA
    BOLGAR, MS
    [J]. JOURNAL OF ANTIBIOTICS, 1990, 43 (08) : 920 - 930
  • [5] A whole-genome assembly of Drosophila
    Myers, EW
    Sutton, GG
    Delcher, AL
    Dew, IM
    Fasulo, DP
    Flanigan, MJ
    Kravitz, SA
    Mobarry, CM
    Reinert, KHJ
    Remington, KA
    Anson, EL
    Bolanos, RA
    Chou, HH
    Jordan, CM
    Halpern, AL
    Lonardi, S
    Beasley, EM
    Brandon, RC
    Chen, L
    Dunn, PJ
    Lai, ZW
    Liang, Y
    Nusskern, DR
    Zhan, M
    Zhang, Q
    Zheng, XQ
    Rubin, GM
    Adams, MD
    Venter, JC
    [J]. SCIENCE, 2000, 287 (5461) : 2196 - 2204
  • [6] Violacein and biofilm production in Janthinobacterium lividum
    Pantanella, F.
    Berlutti, F.
    Passariello, C.
    Sarli, S.
    Morea, C.
    Schippa, S.
    [J]. JOURNAL OF APPLIED MICROBIOLOGY, 2007, 102 (04) : 992 - 999
  • [7] SHIVAJI S, 1991, POLAR BIOL, V11, P267, DOI 10.1007/BF00238461
  • [8] The COG database: new developments in phylogenetic classification of proteins from complete genomes
    Tatusov, RL
    Natale, DA
    Garkavtsev, IV
    Tatusova, TA
    Shankavaram, UT
    Rao, BS
    Kiryutin, B
    Galperin, MY
    Fedorova, ND
    Koonin, EV
    [J]. NUCLEIC ACIDS RESEARCH, 2001, 29 (01) : 22 - 28
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