Criterion that determines the foldability of proteins

被引:188
作者
Klimov, DK [1 ]
Thirumalai, D [1 ]
机构
[1] UNIV MARYLAND,DEPT CHEM & BIOCHEM,COLLEGE PK,MD 20742
关键词
D O I
10.1103/PhysRevLett.76.4070
中图分类号
O4 [物理学];
学科分类号
0702 ;
摘要
We show, using lattice models of proteins, how the kinetic accessibility of the native state of proteins is encoded in the primary sequence itself. The folding times for various sequences correlate extremely well with the single parameter intrinsic to the sequence, namely, sigma = \T-theta - T-f\/T-theta where T-theta and T-f are the collapse and folding transition temperatures. Fast folding sequences have small values of sigma (typically less than 0.1) whereas sigma values for slow folding sequences exceed 0.6. The folding times change by 5 orders of magnitude when sigma goes from 0.05 to a value exceeding about 0.6.
引用
收藏
页码:4070 / 4073
页数:4
相关论文
共 19 条
[1]   PRINCIPLES THAT GOVERN FOLDING OF PROTEIN CHAINS [J].
ANFINSEN, CB .
SCIENCE, 1973, 181 (4096) :223-230
[2]   INTERMEDIATES AND BARRIER CROSSING IN A RANDOM ENERGY-MODEL (WITH APPLICATIONS TO PROTEIN FOLDING) [J].
BRYNGELSON, JD ;
WOLYNES, PG .
JOURNAL OF PHYSICAL CHEMISTRY, 1989, 93 (19) :6902-6915
[3]   KINETICS AND THERMODYNAMICS OF FOLDING IN MODEL PROTEINS [J].
CAMACHO, CJ ;
THIRUMALAI, D .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1993, 90 (13) :6369-6372
[4]   ENERGY LANDSCAPES AND THE COLLAPSE DYNAMICS OF HOMOPOLYMERS [J].
CHAN, HS ;
DILL, KA .
JOURNAL OF CHEMICAL PHYSICS, 1993, 99 (03) :2116-2127
[5]  
CHAN HS, 1995, NATURE, V373, P664
[6]   TRANSITION-STATES AND FOLDING DYNAMICS OF PROTEINS AND HETEROPOLYMERS [J].
CHAN, HS ;
DILL, KA .
JOURNAL OF CHEMICAL PHYSICS, 1994, 100 (12) :9238-9257
[7]   MEAN-FIELD MODEL FOR PROTEIN FOLDING [J].
GAREL, T ;
ORLAND, H .
EUROPHYSICS LETTERS, 1988, 6 (04) :307-310
[8]   THE NATURE OF FOLDED STATES OF GLOBULAR-PROTEINS [J].
HONEYCUTT, JD ;
THIRUMALAI, D .
BIOPOLYMERS, 1992, 32 (06) :695-709
[9]   PROTEIN FOLDING FUNNELS - A KINETIC APPROACH TO THE SEQUENCE STRUCTURE RELATIONSHIP [J].
LEOPOLD, PE ;
MONTAL, M ;
ONUCHIC, JN .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1992, 89 (18) :8721-8725
[10]  
LEVINTHAL C, 1968, MOSSBAUER SPECTROSCO