Non-contiguous finished genome sequence and contextual data of the filamentous soil bacterium Ktedonobacter racemifer type strain (SOSP1-21T)

被引:71
作者
Chang, Yun-juan [2 ,3 ]
Land, Miriam [2 ,3 ]
Hauser, Loren [2 ,3 ]
Chertkov, Olga [3 ,4 ]
Del Rio, Tijana Glavina [3 ]
Nolan, Matt [3 ]
Copeland, Alex [3 ]
Tice, Hope [3 ]
Cheng, Jan-Fang [3 ]
Lucas, Susan [3 ]
Han, Cliff [3 ,4 ]
Goodwin, Lynne [3 ,4 ]
Pitluck, Sam [3 ]
Ivanova, Natalia [3 ]
Ovchinikova, Galina [3 ]
Pati, Amrita [3 ]
Chen, Amy [5 ]
Palaniappan, Krishna [5 ]
Mavromatis, Konstantinos [3 ]
Liolios, Konstantinos [3 ]
Brettin, Thomas [3 ,4 ]
Fiebig, Anne [1 ]
Rohde, Manfred [6 ]
Abt, Birte [1 ]
Goeker, Markus [1 ]
Detter, John C. [3 ,4 ]
Woyke, Tanja [3 ]
Bristow, James [3 ]
Eisen, Jonathan A. [3 ,7 ]
Markowitz, Victor [5 ]
Hugenholtz, Philip [3 ,8 ]
Kyrpides, Nikos C. [3 ]
Klenk, Hans-Peter [1 ]
Lapidus, Alla [3 ]
机构
[1] DSMZ German Collect Microorganisms & Cell Culture, Braunschweig, Germany
[2] Oak Ridge Natl Lab, Oak Ridge, TN USA
[3] DOE Joint Genome Inst, Walnut Creek, CA USA
[4] Los Alamos Natl Lab, Biosci Div, Los Alamos, NM USA
[5] Univ Calif Berkeley, Lawrence Berkeley Natl Lab, Biol Data Management & Technol Ctr, Berkeley, CA 94720 USA
[6] HZI Helmholtz Ctr Infect Res, Braunschweig, Germany
[7] Univ Calif Davis, Genome Ctr, Davis, CA 95616 USA
[8] Univ Queensland, Australian Ctr Ecogen, Sch Chem & Mol Biosci, Brisbane, Qld, Australia
关键词
aerobic; heterotrophic; filamentous; non-motile; Gram-positive; moderately acidophilic; sporulating; transposon; broken-stick distribution; entropy; Ktedonobacteraceae; Chloroflexi; GEBA; GROUP-II INTRONS; SPHAEROBACTER-THERMOPHILUS; EMENDED DESCRIPTION; ARCHAEA; ALGORITHM; SYSTEM; ROSEUM; TOOL; NOV;
D O I
10.4056/sigs.2114901
中图分类号
Q3 [遗传学];
学科分类号
071007 ; 090102 ;
摘要
Ktedonobacter racemifer corrig. Cavaletti et al. 2007 is the type species of the genus Ktedonobacter, which in turn is the type genus of the family Ktedonobacteraceae, the type family of the order Ktedonobacterales within the class Ktedonobacteria in the phylum 'Chloroflexi'. Although K. racemifer shares some morphological features with the actinobacteria, it is of special interest because it was the first cultivated representative of a deep branching unclassified lineage of otherwise uncultivated environmental phylotypes tentatively located within the phylum 'Chloroflexi'. The aerobic, filamentous, non-motile, spore-forming Gram-positive heterotroph was isolated from soil in Italy. The 13,661,586 bp long non-contiguous finished genome consists of ten contigs and is the first reported genome sequence from a member of the class Ktedonobacteria. With its 11,453 protein-coding and 87 RNA genes, it is the largest prokaryotic genome reported so far. It comprises a large number of over-represented COGs, particularly genes associated with transposons, causing the genetic redundancy within the genome being considerably larger than expected by chance. This work is a part of the Genomic Encyclopedia of Bacteria and Archaea project.
引用
收藏
页码:97 / 111
页数:15
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