RuleBender: a visual interface for rule-based modeling

被引：21

作者：

Xu, Wen ^{[2
]}

Smith, Adam M. ^{[2
]}

Faeder, James R. ^{[1
]}

Marai, G. Elisabeta ^{[2
]}

机构：

[1] Univ Pittsburgh, Sch Med, Dept Computat & Syst Biol, Pittsburgh, PA 15260 USA

[2] Univ Pittsburgh, Dept Comp Sci, Pittsburgh, PA 15260 USA

来源：

BIOINFORMATICS | 2011年 / 27卷 / 12期

基金：

美国国家科学基金会; 美国国家卫生研究院;

关键词：

SIMULATION; SYSTEMS;

D O I：

10.1093/bioinformatics/btr197

中图分类号：

Q5 [生物化学];

学科分类号：

071010 ; 081704 ;

摘要：

Rule-based modeling (RBM) is a powerful and increasingly popular approach to modeling intracellular biochemistry. Current interfaces for RBM are predominantly text-based and command-line driven. Better visual tools are needed to make RBM accessible to a broad range of users, to make specification of models less error prone and to improve workflows. We present RULEBENDER, an open-source visual interface that facilitates interactive debugging, simulation and analysis of RBMs.

引用

页码：1721 / 1722

页数：2

共 6 条

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