On the feasibility of recognition of nucleic acid sequences by metal-ion-carrying oligonucleotides

被引:45
作者
Taherpour, Sharmin [1 ]
Golubev, Oleg [1 ]
Lonnberg, Tuomas [1 ]
机构
[1] Univ Turku, Dept Chem, Vatselankatu 2, FIN-20014 Turku, Finland
基金
芬兰科学院;
关键词
Metal complexes; Base pairing; Oligonucleotide; Hybridization; Sequence recognition; MEDIATED BASE-PAIRS; PROTON-MAGNETIC-RESONANCE; MIXED-LIGAND COMPLEXES; C-AG-C; HG-II; CRYSTAL-STRUCTURE; BUILDING-BLOCK; DNA DUPLEXES; SOFT ACIDS; BINDING;
D O I
10.1016/j.ica.2016.01.025
中图分类号
O61 [无机化学];
学科分类号
070301 ; 081704 ;
摘要
Metal-ion-mediated base pairing has been extensively studied in the context of DNA nanotechnology or expansion of the genetic alphabet but only recently with the aim of recognition of natural nucleic acid sequences. This review article focuses on the attempts to utilize metal-ion-carrying oligonucleotides as high-affinity probes for nucleic acids but relevant studies carried out at the monomer level are also discussed. Special emphasis is given to challenges inherent to this approach, such as the limited recognition elements of the canonical nucleobases and the scarcity of suitable metal ions in the intracellular medium. Finally, potential ways to overcome these challenges are proposed. (C) 2016 Elsevier B.V. All rights reserved.
引用
收藏
页码:43 / 49
页数:7
相关论文
共 96 条
[1]   M-DNA:: A complex between divalent metal ions and DNA which behaves as a molecular wire [J].
Aich, P ;
Labiuk, SL ;
Tari, LW ;
Delbaere, LJT ;
Roesler, WJ ;
Falk, KJ ;
Steer, RP ;
Lee, JS .
JOURNAL OF MOLECULAR BIOLOGY, 1999, 294 (02) :477-485
[2]   Structure of a copper-mediated base pair in DNA [J].
Atwell, S ;
Meggers, E ;
Spraggon, G ;
Schultz, PG .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2001, 123 (49) :12364-12367
[3]   CRYSTAL-STRUCTURE OF A DIMERIC 1-METHYLCYTOSINE MERCURIC-CHLORIDE COMPLEX [J].
AUTHIERMARTIN, M ;
BEAUCHAMP, AL .
CANADIAN JOURNAL OF CHEMISTRY-REVUE CANADIENNE DE CHIMIE, 1977, 55 (07) :1213-1217
[4]   Pyrazolylboratozinc complexes of nucleosides and nucleoside analogues [J].
Badura, D ;
Vahrenkamp, H .
EUROPEAN JOURNAL OF INORGANIC CHEMISTRY, 2003, (20) :3723-3730
[5]   Conformational change induced by metal-ion-binding to DNA containing the artificial 1,2,4-triazole nucleoside [J].
Bohme, Dominik ;
Dupre, Nicole ;
Megger, Dominik A. ;
Muller, Jens .
INORGANIC CHEMISTRY, 2007, 46 (24) :10114-10119
[6]  
Cech D., 1996, ANGEW CHEM INT EDIT, V35, P646
[7]   PROTON MAGNETIC-RESONANCE INVESTIGATION ON 1-1 CYTIDINE AND GUANOSINE SILVER (I) COMPLEXES [J].
CINI, R ;
COLAMARINO, P ;
ORIOLI, PL .
BIOINORGANIC CHEMISTRY, 1977, 7 (04) :345-349
[8]   DNA-metal base pairs [J].
Clever, Guido H. ;
Kaul, Corinna ;
Carell, Thomas .
ANGEWANDTE CHEMIE-INTERNATIONAL EDITION, 2007, 46 (33) :6226-6236
[9]   Metal-salen-base-pair complexes inside DNA:: Complexation overrides sequence information [J].
Clever, Guido H. ;
Soeltl, Yvonne ;
Burks, Heather ;
Spahl, Werner ;
Carell, Thomas .
CHEMISTRY-A EUROPEAN JOURNAL, 2006, 12 (34) :8708-8718
[10]   Metal-base pairing in DNA [J].
Clever, Guido H. ;
Shionoya, Mitsuhiko .
COORDINATION CHEMISTRY REVIEWS, 2010, 254 (19-20) :2391-2402