A tenth crucial question regarding model use in phylogenetics

被引：18

作者：

Gatesy, John ^{[1
]}

机构：

[1] Univ Calif Riverside, Dept Biol, Riverside, CA 92521 USA

来源：

TRENDS IN ECOLOGY & EVOLUTION | 2007年 / 22卷 / 10期

关键词：

D O I：

10.1016/j.tree.2007.08.002

中图分类号：

Q14 [生态学（生物生态学）];

学科分类号：

071012 ; 0713 ;

摘要：

引用

页码：509 / 510

页数：2

共 10 条

[1] Bayesian model adequacy and choice in phylogenetics [J].

Bollback, JP .

MOLECULAR BIOLOGY AND EVOLUTION, 2002, 19 (07) :1171-1180

[2]

Felsenstein Joseph, 2004, Inferring_phylogenies, V2

[3] STATISTICAL TESTS OF MODELS OF DNA SUBSTITUTION [J].

GOLDMAN, N .

JOURNAL OF MOLECULAR EVOLUTION, 1993, 36 (02) :182-198

[4] Frequentist properties of Bayesian posterior probabilities of phylogenetic trees under simple and complex substitution models [J].

Huelsenbeck, JP ;

Rannala, B .

SYSTEMATIC BIOLOGY, 2004, 53 (06) :904-913

[5] Model use in phylogenetics: nine key questions [J].

Kelchner, Scot A. ;

Thomas, Michael A. .

TRENDS IN ECOLOGY & EVOLUTION, 2007, 22 (02) :87-94

[6] MODELTEST: testing the model of DNA substitution [J].

Posada, D ;

Crandall, KA .

BIOINFORMATICS, 1998, 14 (09) :817-818

[7] HETEROGENEITY IN THE SUBSTITUTION PROCESS OF AMINO-ACID SITES OF PROTEINS CODED FOR BY MITOCHONDRIAL-DNA [J].

REEVES, JH .

JOURNAL OF MOLECULAR EVOLUTION, 1992, 35 (01) :17-31

[8] Should we use model-based methods for phylogenetic inference when we know that assumptions about among-site rate variation and nucleotide substitution pattern are violated? [J].

Sullivan, J ;

Swofford, DL .

SYSTEMATIC BIOLOGY, 2001, 50 (05) :723-729

[9] Model selection in phylogenetics [J].

Sullivan, J ;

Joyce, P .

ANNUAL REVIEW OF ECOLOGY EVOLUTION AND SYSTEMATICS, 2005, 36 :445-466

[10] Measuring the fit of sequence data to phylogenetic model: Allowing for missing data [J].

Waddell, PJ .

MOLECULAR BIOLOGY AND EVOLUTION, 2005, 22 (03) :395-401

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