The sequence structure and phylogenetic analysis by complete mitochondrial genome of kohlrabi (Brassica oleracea var. gongylodes L.)

被引：6

作者：

Shao, Dengkui ^{[1
,2
]}

Ma, Yidong ^{[1
]}

Li, Xiaojuan ^{[1
]}

Ga, Sang ^{[3
]}

Ren, Yanjing ^{[1
,2
]}

机构：

[1] Qinghai Univ, Qinghai Acad Agr & Forestry Sci, Xining, Peoples R China

[2] Qinghai Key Lab Vegetable Genet & Physiol, Xining, Peoples R China

[3] Comprehens Agr & Anim Husb Serv Ctr Yushu Tibetan, Yushu, Peoples R China

来源：

MITOCHONDRIAL DNA PART B-RESOURCES | 2021年 / 6卷 / 09期

关键词：

Kohlrabi; mitochondrial genome; genome structure; phylogenetic analysis; GENES;

D O I：

10.1080/23802359.2021.1966341

中图分类号：

Q3 [遗传学];

学科分类号：

071007 ; 090102 ;

摘要：

Kohlrabi (Brassica oleracea var. gongylodes L.) is an important dietary rhizome vegetable in the Brassicaceae family. However, to date, few mitochondrial genomic resources have been reported for kohlrabi. In this study, we obtained the complete mitochondrial DNA sequence of 219,964 bp from an individual green kohlrabi. A total of 61 genes were annotated, including 33 protein-coding genes, 23 transfer RNA genes, three ribosomal RNA genes, and two pseudo genes. In addition, 1,001 open reading frames and five RNA editing sites were annotated. Relative synonymous codon usage analysis revealed significant difference in usage frequency of synonymous codon. Phylogenetic inference showed that kohlrabi is closely related to B. oleracea var. botrytis. This study provides a good foundation for further understanding the relationship and evolutionary origins among Brassicaceae crops.

引用

页码：2714 / 2716

页数：3

共 19 条

[1]

Chan PP, 2019, METHODS MOL BIOL, V1962, P1, DOI 10.1007/978-1-4939-9173-0_1

[2] Complete chloroplast genome sequence of turnip (Brassica rapa. ssp.rapa): genome structure and phylogenetic analysis [J].

Han, Rui ;

Tian, Minyu ;

Zhang, Guangnan ;

Shao, Dengkui ;

Ren, Yanjing .

MITOCHONDRIAL DNA PART B-RESOURCES, 2020, 5 (03) :3573-3575

[3] Complete mitochondrial genome sequences of Brassica rapa (Chinese cabbage and mizuna), and intraspecific differentiation of cytoplasm in B-rapa and Brassica juncea [J].

Hatono, Saki ;

Nishimura, Kaori ;

Murakami, Yoko ;

Tsujimura, Mai ;

Yamagishi, Hiroshi .

BREEDING SCIENCE, 2017, 67 (04) :357-362

[4] Health-Affecting Compounds in Brassicaceae [J].

Jahangir, Muhammad ;

Kim, Hye K. ;

Choi, Young H. ;

Verpoorte, Robert .

COMPREHENSIVE REVIEWS IN FOOD SCIENCE AND FOOD SAFETY, 2009, 8 (02) :31-43

[5] Complete sequence of kenaf (Hibiscus cannabinus) mitochondrial genome and comparative analysis with the mitochondrial genomes of other plants [J].

Liao, Xiaofang ;

Zhao, Yanhong ;

Kong, Xiangjun ;

Khan, Aziz ;

Zhou, Bujin ;

Liu, Dongmei ;

Kashif, Muhammad Haneef ;

Chen, Peng ;

Wang, Hong ;

Zhou, Ruiyang .

SCIENTIFIC REPORTS, 2018, 8

[6]

Lim T.K., 2015, Edible Medicinal and Non Medicinal Plants, P768, DOI [10.1007/978-94-017-9511-1_27, DOI 10.1007/978-94-017-9511-1_27]

[7] UNICIRCULAR STRUCTURE OF THE BRASSICA-HIRTA MITOCHONDRIAL GENOME [J].

PALMER, JD ;

HERBON, LA .

CURRENT GENETICS, 1987, 11 (6-7) :565-570

[8] PLANT MITOCHONDRIAL-DNA EVOLVES RAPIDLY IN STRUCTURE, BUT SLOWLY IN SEQUENCE [J].

PALMER, JD ;

HERBON, LA .

JOURNAL OF MOLECULAR EVOLUTION, 1988, 28 (1-2) :87-97

[9] Metabolic Profiling of Glucosinolates, Anthocyanins, Carotenoids, and Other Secondary Metabolites in Kohlrabi (Brassica oleracea var. gongylodes) [J].

Park, Woo Tae ;

Kim, Jae Kwang ;

Park, Suhyoung ;

Lee, Sang-Won ;

Li, Xiaohua ;

Kim, Yeon Bok ;

Uddin, Md. Romij ;

Park, Nam Il ;

Kim, Sun-Ju ;

Park, Sang Un .

JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY, 2012, 60 (33) :8111-8116

[10] Modification of a CTAB DNA extraction protocol for plants containing high polysaccharide and polyphenol components [J].

Porebski, S ;

Bailey, LG ;

Baum, BR .

PLANT MOLECULAR BIOLOGY REPORTER, 1997, 15 (01) :8-15

← 1 2 →