VariScan: Analysis of evolutionary patterns from large-scale DNA sequence polymorphism data

被引:107
作者
Vilella, AJ [1 ]
Blanco-Garcia, A [1 ]
Hutter, S [1 ]
Rozas, J [1 ]
机构
[1] Univ Barcelona, Fac Biol, Dept Genet, E-08028 Barcelona, Spain
关键词
D O I
10.1093/bioinformatics/bti403
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
VeriScan is a software package for the analysis of DNA sequence polymorphisms at the whole genome scale. Among other features, the software (1) can conduct many population genetic analyses; (2) incorporates a multiresolution wavelet transform-based method that allows capturing relevant information from DNA polymorphism data; (3) facilitates the visualization of the results in the most commonly used genome browsers.
引用
收藏
页码:2791 / 2793
页数:3
相关论文
共 50 条
[31]   Scalable Algorithms for Bayesian Inference of Large-Scale Models from Large-Scale Data [J].
Ghattas, Omar ;
Isaac, Tobin ;
Petra, Noemi ;
Stadler, Georg .
HIGH PERFORMANCE COMPUTING FOR COMPUTATIONAL SCIENCE - VECPAR 2016, 2017, 10150 :3-6
[32]   Large-scale real-world data analysis identifies comorbidity patterns in schizophrenia [J].
Lu, Chenyue ;
Jin, Di ;
Palmer, Nathan ;
Fox, Kathe ;
Kohane, Isaac S. ;
Smoller, Jordan W. ;
Yu, Kun-Hsing .
TRANSLATIONAL PSYCHIATRY, 2022, 12 (01)
[33]   AN EXPERIMENTALLY DERIVED DATA SET CONSTRUCTED FOR TESTING LARGE-SCALE DNA-SEQUENCE ASSEMBLY ALGORITHMS [J].
SETO, D ;
KOOP, BF ;
HOOD, L .
GENOMICS, 1993, 15 (03) :673-676
[34]   Large-scale analysis of integrated neurogenomic data [J].
Schork, Nicholas .
BIOLOGICAL PSYCHIATRY, 2007, 61 (08) :2S-2S
[35]   Large-Scale Data Analysis on Cloud Systems [J].
Marozzo, Fabrizio ;
Talia, Domenico ;
Trunfio, Paolo .
ERCIM NEWS, 2012, (89) :26-27
[36]   TranSeqAnnotator: large-scale analysis of transcriptomic data [J].
Menon, Ranjeeta ;
Garg, Gagan ;
Gasser, Robin B. ;
Ranganathan, Shoba .
BMC BIOINFORMATICS, 2012, 13
[37]   Large-scale real-world data analysis identifies comorbidity patterns in schizophrenia [J].
Chenyue Lu ;
Di Jin ;
Nathan Palmer ;
Kathe Fox ;
Isaac S. Kohane ;
Jordan W. Smoller ;
Kun-Hsing Yu .
Translational Psychiatry, 12
[38]   ANALYSIS OF LARGE-SCALE FIRE TEST DATA [J].
PEACOCK, RD ;
BABRAUSKAS, V .
FIRE SAFETY JOURNAL, 1991, 17 (05) :387-414
[39]   A Comparison of Approaches to Large-Scale Data Analysis [J].
Pavlo, Andrew ;
Paulson, Erik ;
Rasin, Alexander ;
Abadi, Daniel J. ;
DeWitt, David J. ;
Madden, Samuel ;
Stonebraker, Michael .
ACM SIGMOD/PODS 2009 CONFERENCE, 2009, :165-178
[40]   Large-Scale Analysis of Aircraft Transponder Data [J].
Strohmeier, Martin .
IEEE AEROSPACE AND ELECTRONIC SYSTEMS MAGAZINE, 2017, 32 (01) :42-44