Dichomitus squalens partially tailors its molecular responses to the composition of solid wood

被引:24
作者
Daly, Paul [1 ,2 ]
Lopez, Sara Casado [1 ,2 ]
Peng, Mao [1 ,2 ]
Lancefield, Christopher S. [3 ]
Purvine, Samuel O. [4 ]
Kim, Young-Mo [5 ]
Zink, Erika M. [5 ]
Dohnalkova, Alice [4 ]
Singan, Vasanth R. [6 ]
Lipzen, Anna [6 ]
Dilworth, David [6 ]
Wang, Mei [6 ]
Ng, Vivian [6 ]
Robinson, Errol [4 ]
Orr, Galya [4 ]
Baker, Scott E. [4 ]
Bruijnincx, Pieter C. A. [3 ]
Hilden, Kristiina S. [7 ]
Grigoriev, Igor V. [6 ]
Maekelae, Miia R. [7 ]
de Vries, Ronald P. [1 ,2 ,7 ]
机构
[1] Univ Utrecht, Westerdijk Fungal Biodivers Inst, Fungal Physiol, Utrecht, Netherlands
[2] Univ Utrecht, Fungal Mol Physiol, Utrecht, Netherlands
[3] Univ Utrecht, Debye Inst Nanomat Sci, Inorgan Chem & Catalysis, Utrecht, Netherlands
[4] Pacific Northwest Natl Lab, Environm Mol Sci Lab, Richland, WA USA
[5] Pacific Northwest Natl Lab, Biol Sci Div, Richland, WA USA
[6] US DOE, Joint Genome Inst, Walnut Creek, CA USA
[7] Univ Helsinki, Dept Microbiol, Helsinki, Finland
基金
芬兰科学院;
关键词
LIQUID-CHROMATOGRAPHY; AROMATIC-COMPOUNDS; GENE-EXPRESSION; ACCURATE MASS; LIGNIN; BIOMASS; DEGRADATION; ASPERGILLUS; FUNGI; MODEL;
D O I
10.1111/1462-2920.14416
中图分类号
Q93 [微生物学];
学科分类号
071005 ; 100705 ;
摘要
White-rot fungi, such as Dichomitus squalens, degrade all wood components and inhabit mixed-wood forests containing both soft- and hardwood species. In this study, we evaluated how D. squalens responded to the compositional differences in softwood [guaiacyl (G) lignin and higher mannan content] and hardwood [syringyl/guaiacyl (S/G) lignin and higher xylan content] using semi-natural solid cultures. Spruce (softwood) and birch (hardwood) sticks were degraded by D. squalens as measured by oxidation of the lignins using 2D-NMR. The fungal response as measured by transcriptomics, proteomics and enzyme activities showed a partial tailoring to wood composition. Mannanolytic transcripts and proteins were more abundant in spruce cultures, while a proportionally higher xylanolytic activity was detected in birch cultures. Both wood types induced manganese peroxidases to a much higher level than laccases, but higher transcript and protein levels of the manganese peroxidases were observed on the G-lignin rich spruce. Overall, the molecular responses demonstrated a stronger adaptation to the spruce rather than birch composition, possibly because D. squalens is mainly found degrading softwoods in nature, which supports the ability of the solid wood cultures to reflect the natural environment.
引用
收藏
页码:4141 / 4156
页数:16
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