Different IncI1 plasmids from Escherichia coli carry ISEcp1-blaCTX-M-15 associated with different Tn2-derived elements

被引:28
作者
Zong, Zhiyong [1 ,2 ,3 ]
Ginn, Andrew N. [1 ,2 ]
Dobiasova, Hana [1 ,2 ,4 ,5 ]
Iredell, Jonathan R. [1 ,2 ]
Partridge, Sally R. [1 ,2 ]
机构
[1] Univ Sydney, Westmead Millennium Inst, Ctr Infect Dis & Microbiol, Westmead, NSW 2145, Australia
[2] Westmead Hosp, Westmead, NSW 2145, Australia
[3] Sichuan Univ, Dept Infect Dis, West China Hosp, Chengdu 610064, Peoples R China
[4] Univ Vet & Pharmaceut Sci, Fac Vet Hyg & Ecol, Dept Biol & Wildlife Dis, Brno, Czech Republic
[5] Univ Vet & Pharmaceut Sci, CEITEC VFU, Brno, Czech Republic
基金
英国医学研究理事会; 爱尔兰科学基金会; 英国生物技术与生命科学研究理事会; 英国惠康基金;
关键词
IncI1; bla(CTX-M-15); ISEcp1; Tn2; S26; Recombination; BETA-LACTAMASE GENE; COMPLETE NUCLEOTIDE-SEQUENCE; ANTIBIOTIC-RESISTANCE; CLONAL GROUP; CTX-M; BLA(CTX-M); EVOLUTION; CTX-M-15; TRANSPOSITION; MOBILIZATION;
D O I
10.1016/j.plasmid.2015.04.007
中图分类号
Q3 [遗传学];
学科分类号
071007 ; 090102 ;
摘要
The bla(CTX-M-15) gene, encoding the globally dominant CTX-M-15 extended-spectrum p-lactamase, has generally been found in a 2.971-kb ISEcp1-bla(CTX-M-15)-orf477 Delta transposition unit, with ISEcp1 providing a promoter. In available IncF plasmid sequences from Escherichia coli, this transposition unit interrupts a truncated copy of transposon Tn2 that lies within larger multiresistance regions. In E. coli, bla(CTX-M-15) is also commonly associated with IncI1 plasmids and here three such plasmids from E. coli clinical isolates from western Sydney 2006-2007 have been sequenced. The plasmid backbones are organised similarly to those of other Inch 1 plasmids, but have insertions and/or deletions and sequence differences. Each plasmid also has a different insertion carrying bla(CTX-M-15). pJIE113 (IncI1 sequence type ST31) is almost identical to plasmids isolated from the 2011 E. coli 0104:H4 outbreak in Europe, where the typical bla(CTX-M-15) transposition unit interrupts a complete Tn2 inserted directly in the plasmid backbone. In the novel plasmid pJIE139 (ST88), ISEcp1-bla(CTX-M-15-)orf477 Delta lies within a Tn2/3 hybrid transposon. Homologous recombination could explain movement of ISEcp1-bla(CTX-M-15)-orf477 Delta A between copies of Tn2 on IncF and IncI1 plasmids and generation of the Tn2/3 hybrid. pJIE174 (ST37) is almost identical to pESBL-12 from the Netherlands and in these plasmids bla(CTX-M-15) is flanked by two copies of 1526 that truncate the transposition unit within a larger region bounded by the ends of Tn2. bla(CTX-M-15) and the associated ISEcp1-derived promoter may be able to move from this structure by the actions of IS26, independently of both ISEcp1 and Tn2. (C) 2015 Elsevier Inc. All rights reserved.
引用
收藏
页码:118 / 126
页数:9
相关论文
共 52 条
[1]   Genomic Comparison of Escherichia coli O104:H4 Isolates from 2009 and 2011 Reveals Plasmid, and Prophage Heterogeneity, Including Shiga Toxin Encoding Phage stx2 [J].
Ahmed, Sanaa A. ;
Awosika, Joy ;
Baldwin, Carson ;
Bishop-Lilly, Kimberly A. ;
Biswas, Biswajit ;
Broomall, Stacey ;
Chain, Patrick S. G. ;
Chertkov, Olga ;
Chokoshvili, Otar ;
Coyne, Susan ;
Davenport, Karen ;
Detter, J. Chris ;
Dorman, William ;
Erkkila, Tracy H. ;
Folster, Jason P. ;
Frey, Kenneth G. ;
George, Matroner ;
Gleasner, Cheryl ;
Henry, Matthew ;
Hill, Karen K. ;
Hubbard, Kyle ;
Insalaco, Joseph ;
Johnson, Shannon ;
Kitzmiller, Aaron ;
Krepps, Michael ;
Lo, Chien-Chi ;
Truong Luu ;
McNew, Lauren A. ;
Minogue, Timothy ;
Munk, Christine A. ;
Osborne, Brian ;
Patel, Mohit ;
Reitenga, Krista G. ;
Rosenzweig, C. Nicole ;
Shea, April ;
Shen, Xiaohong ;
Strockbine, Nancy ;
Tarr, Cheryl ;
Teshima, Hazuki ;
van Gieson, Eric ;
Verratti, Kathleen ;
Wolcott, Mark ;
Xie, Gary ;
Sozhamannan, Shanmuga ;
Gibbons, Henry S. .
PLOS ONE, 2012, 7 (11)
[2]   Waste water effluent contributes to the dissemination of CTX-M-15 in the natural environment [J].
Amos, G. C. A. ;
Hawkey, P. M. ;
Gaze, W. H. ;
Wellington, E. M. .
JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY, 2014, 69 (07) :1785-1791
[3]   Extended-spectrum beta-lactamase-producing Shiga toxin gene (stx1)-positive Escherichia coli O91:H14 carrying blaCTX-M-15 on an IncI1-ST31 plasmid isolated from a human patient in Germany [J].
Arvand, Mardjan ;
Bettge-Weller, Gudrun ;
Fruth, Angelika ;
Uphoff, Helmut ;
Pfeifer, Yvonne .
INTERNATIONAL JOURNAL OF MEDICAL MICROBIOLOGY, 2015, 305 (03) :404-407
[4]   Distribution of the blaTEM gene and blaTEM-containing transposons in commensal Escherichia coli [J].
Bailey, Jannine K. ;
Pinyon, Jeremy L. ;
Anantham, Sashindran ;
Hall, Ruth M. .
JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY, 2011, 66 (04) :745-751
[5]   SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing [J].
Bankevich, Anton ;
Nurk, Sergey ;
Antipov, Dmitry ;
Gurevich, Alexey A. ;
Dvorkin, Mikhail ;
Kulikov, Alexander S. ;
Lesin, Valery M. ;
Nikolenko, Sergey I. ;
Son Pham ;
Prjibelski, Andrey D. ;
Pyshkin, Alexey V. ;
Sirotkin, Alexander V. ;
Vyahhi, Nikolay ;
Tesler, Glenn ;
Alekseyev, Max A. ;
Pevzner, Pavel A. .
JOURNAL OF COMPUTATIONAL BIOLOGY, 2012, 19 (05) :455-477
[6]   A GENERAL-METHOD FOR DETECTING AND SIZING LARGE PLASMIDS [J].
BARTON, BM ;
HARDING, GP ;
ZUCCARELLI, AJ .
ANALYTICAL BIOCHEMISTRY, 1995, 226 (02) :235-240
[7]   Scaffolding pre-assembled contigs using SSPACE [J].
Boetzer, Marten ;
Henkel, Christiaan V. ;
Jansen, Hans J. ;
Butler, Derek ;
Pirovano, Walter .
BIOINFORMATICS, 2011, 27 (04) :578-579
[8]   Complete nucleotide sequence of a 92-kilobase plasmid harboring the CTX-M-15 extended-spectrum beta-lactamase involved in an outbreak in long-term-care facilities in Toronto, Canada [J].
Boyd, DA ;
Tyler, S ;
Christianson, S ;
McGeer, A ;
Muller, MP ;
Willey, BM ;
Bryce, E ;
Gardam, M ;
Nordmann, P ;
Mulvey, MR .
ANTIMICROBIAL AGENTS AND CHEMOTHERAPY, 2004, 48 (10) :3758-3764
[9]   Epidemiology of extended-spectrum β-lactamase-producing Escherichia coli in Sweden 2007-2011 [J].
Brolund, A. ;
Edquist, P. J. ;
Makitalo, B. ;
Olsson-Liljequist, B. ;
Soderblom, T. ;
Wisell, K. Tegmark ;
Giske, C. G. .
CLINICAL MICROBIOLOGY AND INFECTION, 2014, 20 (06) :O344-O352
[10]  
Brouwer M.S., 2014, GENOME ANNOUNC, V2