Coral-associated bacteria demonstrate phylosymbiosis and cophylogeny

被引:247
作者
Pollock, F. Joseph [1 ]
McMinds, Ryan [2 ]
Smith, Styles [1 ]
Bourne, David G. [3 ,4 ]
Willis, Bette L. [3 ,5 ]
Medina, Monica [1 ,6 ]
Thurber, Rebecca Vega [2 ]
Zaneveld, Jesse R. [7 ]
机构
[1] Penn State Univ, Dept Biol, Mueller Lab 208, State Coll, PA 16802 USA
[2] Oregon State Univ, Dept Microbiol, 226 Nash Hall, Corvallis, OR 97331 USA
[3] James Cook Univ, Coll Sci & Engn, Townsville, Qld 4811, Australia
[4] Australian Inst Marine Sci, Townsville, Qld 4810, Australia
[5] James Cook Univ, ARC Ctr Excellence Coral Reef Studies, Townsville, Qld 4811, Australia
[6] Smithsonian Inst, Smithsonian Trop Res Inst, 9100 Panama City PL, Washington, DC 20521 USA
[7] Univ Washington, Sch Sci Technol Engn & Math, Div Biol Sci, UWBB 277, Bothell, WA 98011 USA
基金
美国国家科学基金会;
关键词
BAND DISEASE; REEF CORAL; DIVERSITY; EVOLUTION; COMMUNITIES;
D O I
10.1038/s41467-018-07275-x
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
Scleractinian corals' microbial symbionts influence host health, yet how coral microbiomes assembled over evolution is not well understood. We survey bacterial and archaeal communities in phylogenetically diverse Australian corals representing more than 425 million years of diversification. We show that coral microbiomes are anatomically compartmentalized in both modern microbial ecology and evolutionary assembly. Coral mucus, tissue, and skeleton microbiomes differ in microbial community composition, richness, and response to host vs. environmental drivers. We also find evidence of coral-microbe phylosymbiosis, in which coral microbiome composition and richness reflect coral phylogeny. Surprisingly, the coral skeleton represents the most biodiverse coral microbiome, and also shows the strongest evidence of phylosymbiosis. Interactions between bacterial and coral phylogeny significantly influence the abundance of four groups of bacteria-including Endozoicomonas-like bacteria, which divide into host-generalist and host-specific subclades. Together these results trace microbial symbiosis across anatomy during the evolution of a basal animal lineage.
引用
收藏
页数:13
相关论文
共 63 条
[61]   Minimum information about a marker gene sequence (MIMARKS) and minimum information about any (x) sequence (MIxS) specifications [J].
Yilmaz, Pelin ;
Kottmann, Renzo ;
Field, Dawn ;
Knight, Rob ;
Cole, James R. ;
Amaral-Zettler, Linda ;
Gilbert, Jack A. ;
Karsch-Mizrachi, Ilene ;
Johnston, Anjanette ;
Cochrane, Guy ;
Vaughan, Robert ;
Hunter, Christopher ;
Park, Joonhong ;
Morrison, Norman ;
Rocca-Serra, Philippe ;
Sterk, Peter ;
Arumugam, Manimozhiyan ;
Bailey, Mark ;
Baumgartner, Laura ;
Birren, Bruce W. ;
Blaser, Martin J. ;
Bonazzi, Vivien ;
Booth, Tim ;
Bork, Peer ;
Bushman, Frederic D. ;
Buttigieg, Pier Luigi ;
Chain, Patrick S. G. ;
Charlson, Emily ;
Costello, Elizabeth K. ;
Huot-Creasy, Heather ;
Dawyndt, Peter ;
DeSantis, Todd ;
Fierer, Noah ;
Fuhrman, Jed A. ;
Gallery, Rachel E. ;
Gevers, Dirk ;
Gibbs, Richard A. ;
Gil, Inigo San ;
Gonzalez, Antonio ;
Gordon, Jeffrey I. ;
Guralnick, Robert ;
Hankeln, Wolfgang ;
Highlander, Sarah ;
Hugenholtz, Philip ;
Jansson, Janet ;
Kau, Andrew L. ;
Kelley, Scott T. ;
Kennedy, Jerry ;
Knights, Dan ;
Koren, Omry .
NATURE BIOTECHNOLOGY, 2011, 29 (05) :415-420
[62]   Overfishing and nutrient pollution interact with temperature to disrupt coral reefs down to microbial scales [J].
Zaneveld, Jesse R. ;
Burkepile, Deron E. ;
Shantz, Andrew A. ;
Pritchard, Catharine E. ;
McMinds, Ryan ;
Payet, Jerome P. ;
Welsh, Rory ;
Correa, Adrienne M. S. ;
Lemoine, Nathan P. ;
Rosales, Stephanie ;
Fuchs, Corinne ;
Maynard, Jeffrey A. ;
Thurber, Rebecca Vega .
NATURE COMMUNICATIONS, 2016, 7
[63]   Coral microbial community dynamics in response to anthropogenic impacts near a major city in the central Red Sea [J].
Ziegler, Maren ;
Roik, Anna ;
Porter, Adam ;
Zubier, Khalid ;
Mudarris, Mohammed S. ;
Ormond, Rupert ;
Voolstra, Christian R. .
MARINE POLLUTION BULLETIN, 2016, 105 (02) :629-640