Multistationarity in the activation of a MAPK: Parametrizing the relevant region in parameter space

被引:45
作者
Conradi, Carsten [1 ]
Flockerzi, Dietrich [1 ]
Raisch, Joerg [2 ]
机构
[1] Max Planck Inst Dynam Complex Tech Syst, D-39106 Magdeburg, Germany
[2] Tech Univ Berlin, D-10587 Berlin, Germany
关键词
activation of a MAPK; multistationarity; robust yet fragile; systems of ordinary differential equations;
D O I
10.1016/j.mbs.2007.10.004
中图分类号
Q [生物科学];
学科分类号
07 ; 0710 ; 09 ;
摘要
Mathematical models of biochemical reaction networks in the form of ordinary differential equations can exhibit all sorts of complex dynamical behaviour. It is for example known, that even a single layer of a MAPK cascade can exhibit bistability (i.e. there exist multiple (positive) steady state solutions). It is almost a common-place that bistability or some other form of multistationarity are observed in many biochemical reaction networks, especially if the focus is on signal transduction or cell cycle regulation. However, multistationarity is only exhibited if the parameter vector is located in an appropriate region of parameter space. To find these regions, for example by using numerical tools like bifurcation analysis, is a non-trivial task as it amounts to searching the whole parameter space. In this paper we show that for a model of a single layer of a MAPK cascade it is possible to derive analytical descriptions of these regions, if mass action kinetics are used. Moreover, our results give rise to a straightforward explanation for the robust yet fragile' behaviour in the activation of a MAPK. (c) 2007 Elsevier Inc. All rights reserved.
引用
收藏
页码:105 / 131
页数:27
相关论文
共 32 条
[1]   MAP kinase phosphatase as a locus of flexibility in a mitogen-activated protein kinase signaling network [J].
Bhalla, US ;
Ram, PT ;
Iyengar, R .
SCIENCE, 2002, 297 (5583) :1018-1023
[2]   Robustness of the bistable behavior of a biological signaling feedback loop [J].
Bhalla, US ;
Iyengar, R .
CHAOS, 2001, 11 (01) :221-226
[3]   Emergent properties of networks of biological signaling pathways [J].
Bhalla, US ;
Iyengar, R .
SCIENCE, 1999, 283 (5400) :381-387
[4]   How robust are switches in intracellular signaling cascades? [J].
Blüthgen, N ;
Herzel, H .
JOURNAL OF THEORETICAL BIOLOGY, 2003, 225 (03) :293-300
[5]  
BORIS N, 2006, NATURE REV MOL CELL, V7, P165
[6]   Using chemical reaction network theory to discard a kinetic mechanism hypothesis [J].
Conradi, C ;
Saez-Rodriguez, J ;
Gilles, ED ;
Raisch, J .
IEE PROCEEDINGS SYSTEMS BIOLOGY, 2005, 152 (04) :243-248
[7]  
Conradi C., 2006, P 5 MATHMOD, pSP22_267_P
[8]   The "robust yet fragile" nature of the Internet [J].
Doyle, JC ;
Alderson, DL ;
Li, L ;
Low, S ;
Roughan, M ;
Shalunov, S ;
Tanaka, R ;
Willinger, W .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2005, 102 (41) :14497-14502
[9]   Surviving heat shock: Control strategies for robustness and performance [J].
El-Samad, H ;
Kurata, H ;
Doyle, JC ;
Gross, CA ;
Khammash, M .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2005, 102 (08) :2736-2741
[10]  
Ellison Philipp R, 1998, THESIS U ROCHESTER