The mitochondrial genome of Ruspolia dubia (Orthoptera: Conocephalidae) contains a short A+T-rich region of 70 bp in length

被引：83
作者：
Zhou, Zhijun
Huang, Yuan [1 ]
Shi, Fuming
机构：
[1] Shaanxi Normal Univ, Coll Life Sci, Xian 710062, Shaanxi, Peoples R China
[2] Hebei Univ, Coll Life Sci, Baoding 071002, Hebei, Peoples R China
来源：
GENOME | 2007年 / 50卷 / 09期
关键词：
mitochondrial DNA; A plus T-rich region; RNA secondary structure; tettigonioidea; ensifera;
D O I：
10.1139/G07-057
中图分类号：
Q81 [生物工程学（生物技术）]; Q93 [微生物学];
学科分类号：
071005 ; 0836 ; 090102 ; 100705 ;
摘要：
The complete sequence (14 971 bp) of the Ruspolia dubia mitochondrial genome was determined and annotated. The genome contains the gene content, base composition, and codon usage typical of metazoan mitochondrial genomes. All 37 genes are conserved in the positions observed most frequently in insect mitochondrial genome structures. The secondary structures of both small subunit and large subunit rRNA were predicted. The most unusual features found were the initiation codon (TTA) of COI and a short A+T-rich region of 70 bp in length. In addition, a short, highly conserved poly-thymidine stretch that was previously described in Orthoptera and Diptera was also present in the A+T-rich region.
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页码：855 / 866
页数：12
相关论文
共 31 条
[1]   SEQUENCE AND ORGANIZATION OF THE HUMAN MITOCHONDRIAL GENOME [J].
ANDERSON, S ;
BANKIER, AT ;
BARRELL, BG ;
DEBRUIJN, MHL ;
COULSON, AR ;
DROUIN, J ;
EPERON, IC ;
NIERLICH, DP ;
ROE, BA ;
SANGER, F ;
SCHREIER, PH ;
SMITH, AJH ;
STADEN, R ;
YOUNG, IG .
NATURE, 1981, 290 (5806) :457-465
[2]   SEQUENCE AND GENE ORGANIZATION OF MOUSE MITOCHONDRIAL-DNA [J].
BIBB, MJ ;
VANETTEN, RA ;
WRIGHT, CT ;
WALBERG, MW ;
CLAYTON, DA .
CELL, 1981, 26 (02) :167-180
[3]   Animal mitochondrial genomes [J].
Boore, JL .
NUCLEIC ACIDS RESEARCH, 1999, 27 (08) :1767-1780
[4]   The Comparative RNA Web (CRW) Site:: an online database of comparative sequence and structure information for ribosomal, intron, and other RNAs:: Correction (vol 3, pg 2, 2002) -: art. no. 15 [J].
Cannone, JJ ;
Subramanian, S ;
Schnare, MN ;
Collett, JR ;
D'Souza, LM ;
Du, YS ;
Feng, B ;
Lin, N ;
Madabusi, LV ;
Müller, KM ;
Pande, N ;
Shang, ZD ;
Yu, N ;
Gutell, RR .
BMC BIOINFORMATICS, 2002, 3 (1)
[5]   The mitochondrial genome of the entomophagous endoparasite Xenos vesparum (Insecta: Strepsiptera) [J].
Carapelli, Antonio ;
Vannini, Laura ;
Nardi, Francesco ;
Boore, Jeffrey L. ;
Beani, Laura ;
Dallai, Romano ;
Frati, Francesco .
GENE, 2006, 376 (02) :248-259
[6]   The complete nucleotide sequence and gene organization of the mitochondrial genome of the bumblebee, Bombus ignitus (Hymenoptera: Apidae) [J].
Cha, So Young ;
Yoon, Hyung Joo ;
Lee, Eun Mee ;
Yoon, Myung Hee ;
Hwang, Jae Sam ;
Jin, Byung Rae ;
Han, Yeon Soo ;
Kim, Iksoo .
GENE, 2007, 392 (1-2) :206-220
[7]   THE MITOCHONDRIAL-DNA MOLECULE OF DROSOPHILA-YAKUBA - NUCLEOTIDE-SEQUENCE, GENE ORGANIZATION, AND GENETIC-CODE [J].
CLARY, DO ;
WOLSTENHOLME, DR .
JOURNAL OF MOLECULAR EVOLUTION, 1985, 22 (03) :252-271
[8]   Structural organization of the mitochondrial DNA control region in Aedes aegypti [J].
Duenas, Juan C. Rondan ;
Gardenal, Cristina N. ;
Llinas, Guillermo Albrieu ;
Panzetta-Dutari, Graciela M. .
GENOME, 2006, 49 (08) :931-937
[9]  
Flook PK, 1995, J MOL EVOL, V41, P928, DOI 10.1007/BF00173173
[10]   Characteristics of the nuclear (18S, 5.8S, 28S and 5S) and mitochondrial (12S and 16S) rRNA genes of Apis mellifera (Insecta: Hymenoptera):: structure, organization, and retrotransposable elements [J].
Gillespie, J. J. ;
Johnston, J. S. ;
Cannone, J. J. ;
Gutell, R. R. .
INSECT MOLECULAR BIOLOGY, 2006, 15 (05) :657-686
1234