CHD3 helicase domain mutations cause a neurodevelopmental syndrome with macrocephaly and impaired speech and language

被引:85
作者
Blok, Lot Snijders [1 ,2 ,3 ]
Rousseau, Justine [4 ]
Twist, Joanna [5 ]
Ehresmann, Sophie [4 ]
Takaku, Motoki [5 ]
Venselaar, Hanka [6 ]
Rodan, Lance H. [7 ]
Nowak, Catherine B. [7 ]
Douglas, Jessica [7 ]
Swoboda, Kathryn J. [8 ,9 ]
Steeves, Marcie A. [10 ]
Sahai, Inderneel [10 ]
Stumpel, Connie T. R. M. [11 ,12 ]
Stegmann, Alexander P. A. [11 ,12 ]
Wheeler, Patricia [13 ]
Willing, Marcia [14 ]
Fiala, Elise [14 ]
Kochhar, Aaina [15 ]
Gibson, William T. [16 ,17 ]
Cohen, Ana S. A. [16 ,17 ]
Agbahovbe, Ruky [16 ,17 ]
Innes, A. Micheil [18 ,19 ]
Au, P. Y. Billie [18 ,19 ]
Rankin, Julia [20 ]
Anderson, Ilse J. [21 ]
Skinner, Steven A. [22 ]
Louie, Raymond J. [22 ]
Warren, Hannah E. [22 ]
Afenjar, Alexandra [23 ,24 ]
Keren, Boris [25 ,26 ]
Nava, Caroline [25 ,26 ,27 ]
Buratti, Julien [25 ]
Isapof, Arnaud [28 ,29 ]
Rodriguez, Diana [28 ,30 ]
Lewandowski, Raymond [31 ]
Propst, Jennifer [31 ]
van Essen, Ton [32 ]
Choi, Murim [33 ]
Lee, Sangmoon [33 ]
Chae, Jong H. [34 ]
Price, Susan [35 ]
Schnur, Rhonda E. [36 ]
Douglas, Ganka [36 ]
Wentzensen, Ingrid M. [36 ]
Zweier, Christiane [37 ]
Reis, Andre [37 ]
Bialer, Martin G. [38 ]
Moore, Christine [38 ]
Koopmans, Marije [39 ]
Brilstra, Eva H. [39 ]
机构
[1] Radboud Univ Nijmegen, Dept Human Genet, Med Ctr, NL-6500 HB Nijmegen, Netherlands
[2] Max Planck Inst Psycholinguist, Language & Genet Dept, NL-6500 AH Nijmegen, Netherlands
[3] Radboud Univ Nijmegen, Donders Inst Brain Cognit & Behav, NL-6500 HE Nijmegen, Netherlands
[4] CHU St Justine Res Ctr, Montreal, PQ H3T 1C5, Canada
[5] Natl Inst Environm Hlth Sci, Res Triangle Pk, NC 27709 USA
[6] Radboud Univ Nijmegen, Ctr Mol & Biomol Informat, Radboud Inst Mol Life Sci, Med Ctr, NL-6500 HB Nijmegen, Netherlands
[7] Boston Childrens Hosp, Div Genet & Genom, Boston, MA 02115 USA
[8] Massachusetts Gen Hosp, Dept Neurol, Boston, MA 02114 USA
[9] Harvard Med Sch, Boston, MA 02114 USA
[10] Massachusetts Gen Hosp, Dept Med Genet, Boston, MA 02114 USA
[11] Maastricht Univ, Dept Clin Genet, Med Ctr, NL-6202 AZ Maastricht, Netherlands
[12] Maastricht Univ, GROW Sch Oncol & Dev Biol, Med Ctr, NL-6202 AZ Maastricht, Netherlands
[13] Nemours Childrens Clin, Orlando, FL 32827 USA
[14] Washington Univ, Dept Pediat, Div Genet & Genom Med, Sch Med, St Louis, MO 63110 USA
[15] Valley Childrens Hosp, Madera, CA 93636 USA
[16] British Columbia Childrens Hosp, Res Inst, Vancouver, BC V5Z 4H4, Canada
[17] Univ British Columbia, Dept Med Genet, Vancouver, BC V6H 3N1, Canada
[18] Univ Calgary, Dept Med Genet, Cumming Sch Med, Res Inst, Calgary, AB T2N 4N1, Canada
[19] Univ Calgary, Alberta Childrens Hosp, Cumming Sch Med, Res Inst, Calgary, AB T2N 4N1, Canada
[20] Royal Devon & Exeter NHS Fdn Trust Heavitree, Dept Clin Genet, Exeter EX2 5DW, Devon, England
[21] Univ Tennessee, Dept Med, Div Genet, Med Ctr, Knoxville, TN 37920 USA
[22] Greenwood Genet Ctr, Greenwood, SC 29646 USA
[23] UPMC Univ Paris, GRC ConCer LD, Sorbonne Univ, Dept Med Genet, F-75012 Paris, France
[24] Armand Trousseau Hosp, AP HP, GHUEP, Ctr Reference Malformat & Malad Congenitales Cerv, F-75012 Paris, France
[25] Hop La Pitie Salpetriere, AP HP, Dept Genet, F-75013 Paris, France
[26] UPMC, Grp Rech Clin GRC Deficience Intellectuelle & Aut, F-75005 Paris, France
[27] UPMC Univ Paris 06, UMR S 1127, Sorbonne Univ, INSERM,CNRS UMR 7225,U1127,ICM,Inst Cerveau Moell, F-75013 Paris, France
[28] UPMC Univ Paris 06, Sorbonne Univ, Dept Child Neurol, GRC ConCer LD, F-75012 Paris, France
[29] Armand Trousseau Hosp, AP HP, GHUEP, FILNEMUS,Reference Ctr Neuromuscular Dis Nord Est, F-75012 Paris, France
[30] Armand Trousseau Hosp, AP HP, Natl Reference Ctr Neurogenet Disorders, GHUEP,INSERM U1141, F-75012 Paris, France
[31] Virginia Commonwealth Univ Hlth Syst, Clin Genet Div, Richmond, VA 23298 USA
[32] Univ Med Ctr Groningen, Clin Genet Dept, NL-9700 RB Groningen, Netherlands
[33] Seoul Natl Univ, Dept Biomed Sci, Coll Med, Seoul 08826, South Korea
[34] Seoul Natl Univ, Childrens Hosp, Dept Pediat, Coll Med, Seoul 08826, South Korea
[35] Oxford Univ Hosp NHS Fdn Trust, Oxford OX3 7HE, England
[36] GeneDx, Gaithersburg, MD 20877 USA
[37] Friedrich Alexander Univ Erlangen Nurnberg, Inst Human Genet, D-91054 Erlangen, Germany
[38] Northwell Hlth, Div Med Genet & Genom, Great Neck, NY 11021 USA
[39] Univ Utrecht, Univ Med Ctr Utrecht, Dept Genet, NL-3508 AB Utrecht, Netherlands
[40] St Michaels Hosp, Univ Hosp Bristol, Dept Clin Genet, Bristol BS2 8EG, Avon, England
[41] Paracelsus Med Univ, Univ Childrens Hosp, Dept Clin Genet, A-5020 Salzburg, Austria
[42] Salzburger Landeskliniken & Paracelsus Med Univ, Dept Pediat, A-5020 Salzburg, Austria
[43] Tech Univ Munich, Inst Human Genet, D-81675 Munich, Germany
[44] Helmholtz Zentrum Munchen, Inst Human Genet, D-85764 Neuherberg, Germany
[45] Augustana Coll, Commun Sci & Disorders, Rock Isl, IL 61201 USA
[46] Mayo Clin, Dept Neurol, Rochester, MN 55905 USA
[47] Univ Med Ctr Hamburg Eppendorf, Inst Human Genet, D-20246 Hamburg, Germany
[48] Waseda Univ, Tokyo 1698050, Japan
[49] Univ Bourgogne Franche Comte, Equipe Genet Anomalies Dev, F-21070 Dijon, France
[50] CHU Dijon, Ctr Genet, Hop Enfants, FHU TRANSLAD, F-21079 Dijon, France
基金
英国惠康基金; 加拿大健康研究院;
关键词
DE-NOVO MUTATIONS; INTELLECTUAL DISABILITY; CHROMATIN; COMPLEX; EXOME; DEACETYLASE; FAMILY; GENE; NURD; DISORDERS;
D O I
10.1038/s41467-018-06014-6
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
Chromatin remodeling is of crucial importance during brain development. Pathogenic alterations of several chromatin remodeling ATPases have been implicated in neurodevelopmental disorders. We describe an index case with a de novo missense mutation in CHD3, identified during whole genome sequencing of a cohort of children with rare speech disorders. To gain a comprehensive view of features associated with disruption of this gene, we use a genotype-driven approach, collecting and characterizing 35 individuals with de novo CHD3 mutations and overlapping phenotypes. Most mutations cluster within the ATPase/helicase domain of the encoded protein. Modeling their impact on the three-dimensional structure demonstrates disturbance of critical binding and interaction motifs. Experimental assays with six of the identified mutations show that a subset directly affects ATPase activity, and all but one yield alterations in chromatin remodeling. We implicate de novo CHD3 mutations in a syndrome characterized by intellectual disability, macrocephaly, and impaired speech and language.
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页数:12
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共 49 条
[1]   The nucleosome remodeling and deacetylase complex in development and disease [J].
Basta, Jeannine ;
Rauchman, Michael .
TRANSLATIONAL RESEARCH, 2015, 165 (01) :36-47
[2]   Disruptive CHD8 Mutations Define a Subtype of Autism Early in Development [J].
Bernier, Raphael ;
Golzio, Christelle ;
Xiong, Bo ;
Stessman, Holly A. ;
Coe, Bradley P. ;
Penn, Osnat ;
Witherspoon, Kali ;
Gerdts, Jennifer ;
Baker, Carl ;
Vulto-van Silfhout, Anneke T. ;
Schuurs-Hoeijmakers, Janneke H. ;
Fichera, Marco ;
Bosco, Paolo ;
Buono, Serafino ;
Alberti, Antonino ;
Failla, Pinella ;
Peeters, Hilde ;
Steyaert, Jean ;
Vissers, Lisenka E. L. M. ;
Francescatto, Ludmila ;
Mefford, Heather C. ;
Rosenfeld, Jill A. ;
Bakken, Trygve ;
O'Roak, Brian J. ;
Pawlus, Matthew ;
Moon, Randall ;
Shendure, Jay ;
Amaral, David G. ;
Lein, Ed ;
Rankin, Julia ;
Romano, Corrado ;
de Vries, Bert B. A. ;
Katsanis, Nicholas ;
Eichler, Evan E. .
CELL, 2014, 158 (02) :263-276
[3]   Targeted resequencing in epileptic encephalopathies identifies de novo mutations in CHD2 and SYNGAP1 [J].
Carvill, Gemma L. ;
Heavin, Sinead B. ;
Yendle, Simone C. ;
McMahon, Jacinta M. ;
O'Roak, Brian J. ;
Cook, Joseph ;
Khan, Adiba ;
Dorschner, Michael O. ;
Weaver, Molly ;
Calvert, Sophie ;
Malone, Stephen ;
Wallace, Geoffrey ;
Stanley, Thorsten ;
Bye, Ann M. E. ;
Bleasel, Andrew ;
Howell, Katherine B. ;
Kivity, Sara ;
Mackay, Mark T. ;
Rodriguez-Casero, Victoria ;
Webster, Richard ;
Korczyn, Amos ;
Afawi, Zaid ;
Zelnick, Nathanel ;
Lerman-Sagie, Tally ;
Lev, Dorit ;
Moller, Rikke S. ;
Gill, Deepak ;
Andrade, Danielle M. ;
Freeman, Jeremy L. ;
Sadleir, Lynette G. ;
Shendure, Jay ;
Berkovic, Samuel F. ;
Scheffer, Ingrid E. ;
Mefford, Heather C. .
NATURE GENETICS, 2013, 45 (07) :825-U158
[4]   A novel mutation in EED associated with overgrowth [J].
Cohen, Ana S. A. ;
Tuysuz, Beyhan ;
Shen, Yaoqing ;
Bhalla, Sanjiv K. ;
Jones, Steven J. M. ;
Gibson, William T. .
JOURNAL OF HUMAN GENETICS, 2015, 60 (06) :339-342
[5]   A framework for variation discovery and genotyping using next-generation DNA sequencing data [J].
DePristo, Mark A. ;
Banks, Eric ;
Poplin, Ryan ;
Garimella, Kiran V. ;
Maguire, Jared R. ;
Hartl, Christopher ;
Philippakis, Anthony A. ;
del Angel, Guillermo ;
Rivas, Manuel A. ;
Hanna, Matt ;
McKenna, Aaron ;
Fennell, Tim J. ;
Kernytsky, Andrew M. ;
Sivachenko, Andrey Y. ;
Cibulskis, Kristian ;
Gabriel, Stacey B. ;
Altshuler, David ;
Daly, Mark J. .
NATURE GENETICS, 2011, 43 (05) :491-+
[6]   De novo TBR1 mutations in sporadic autism disrupt protein functions [J].
Deriziotis, Pelagia ;
O'Roak, Brian J. ;
Graham, Sarah A. ;
Estruch, Sara B. ;
Dimitropoulou, Danai ;
Bernier, Raphael A. ;
Gerdts, Jennifer ;
Shendure, Jay ;
Eichler, Evan E. ;
Fisher, Simon E. .
NATURE COMMUNICATIONS, 2014, 5
[7]   A set of regulatory genes co-expressed in embryonic human brain is implicated in disrupted speech development [J].
Eising, Else ;
Carrion-Castillo, Amaia ;
Vino, Arianna ;
Strand, Edythe A. ;
Jakielski, Kathy J. ;
Scerri, Thomas S. ;
Hildebrand, Michael S. ;
Webster, Richard ;
Ma, Alan ;
Mazoyer, Bernard ;
Francks, Clyde ;
Bahlo, Melanie ;
Scheffer, Ingrid E. ;
Morgan, Angela T. ;
Shriberg, Lawrence D. ;
Fisher, Simon E. .
MOLECULAR PSYCHIATRY, 2019, 24 (07) :1065-1078
[8]   The language-related transcription factor FOXP2 is post-translationally modified with small ubiquitin-like modifiers [J].
Estruch, Sara B. ;
Graham, Sarah A. ;
Deriziotis, Pelagia ;
Fisher, Simon E. .
SCIENTIFIC REPORTS, 2016, 6
[9]   Large-scale discovery of novel genetic causes of developmental disorders [J].
Fitzgerald, T. W. ;
Gerety, S. S. ;
Jones, W. D. ;
van Kogelenberg, M. ;
King, D. A. ;
McRae, J. ;
Morley, K. I. ;
Parthiban, V. ;
Al-Turki, S. ;
Ambridge, K. ;
Barrett, D. M. ;
Bayzetinova, T. ;
Clayton, S. ;
Coomber, E. L. ;
Gribble, S. ;
Jones, P. ;
Krishnappa, N. ;
Mason, L. E. ;
Middleton, A. ;
Miller, R. ;
Prigmore, E. ;
Rajan, D. ;
Sifrim, A. ;
Tivey, A. R. ;
Ahmed, M. ;
Akawi, N. ;
Andrews, R. ;
Anjum, U. ;
Archer, H. ;
Armstrong, R. ;
Balasubramanian, M. ;
Banerjee, R. ;
Baralle, D. ;
Batstone, P. ;
Baty, D. ;
Bennett, C. ;
Berg, J. ;
Bernhard, B. ;
Bevan, A. P. ;
Blair, E. ;
Blyth, M. ;
Bohanna, D. ;
Bourdon, L. ;
Bourn, D. ;
Brady, A. ;
Bragin, E. ;
Brewer, C. ;
Brueton, L. ;
Brunstrom, K. ;
Bumpstead, S. J. .
NATURE, 2015, 519 (7542) :223-+
[10]   Mutations in EZH2 Cause Weaver Syndrome [J].
Gibson, William T. ;
Hood, Rebecca L. ;
Zhan, Shing Hei ;
Bulman, Dennis E. ;
Fejes, Anthony P. ;
Moore, Richard ;
Mungall, Andrew J. ;
Eydoux, Patrice ;
Babul-Hirji, Riyana ;
An, Jianghong ;
Marra, Marco A. ;
Chitayat, David ;
Boycott, Kym M. ;
Weaver, David D. ;
Jones, Steven J. M. .
AMERICAN JOURNAL OF HUMAN GENETICS, 2012, 90 (01) :110-118