MCM2 and NUSAP1 Are Potential Biomarkers for the Diagnosis and Prognosis of Pancreatic Cancer

被引:21
作者
Deng, Yajun [1 ,2 ]
Ma, Hanyun [3 ]
Hao, Jinyong [4 ]
Xie, Qiqi [1 ,2 ]
Zhao, Ruochen [1 ,5 ]
机构
[1] Lanzhou Univ, Lanzhou 730030, Gansu, Peoples R China
[2] Lanzhou Univ, Dept Orthopaed, Hosp 2, Lanzhou 730030, Gansu, Peoples R China
[3] Charite Univ Med Berlin, Comprehens Canc Ctr, D-10117 Berlin, Germany
[4] Lanzhou Univ, Dept Gastroenterol, Hosp 2, Lanzhou 730030, Gansu, Peoples R China
[5] Lanzhou Univ, Dept Crit Care Med, Hosp 2, Lanzhou 730030, Gansu, Peoples R China
关键词
SPINDLE-ASSOCIATED PROTEIN-1; CELL-CYCLE PROGRESSION; HEPATOCELLULAR-CARCINOMA; POOR-PROGNOSIS; PROLIFERATION; EXPRESSION; ADENOCARCINOMA; NUCLEOLAR; RESISTANCE; MANAGEMENT;
D O I
10.1155/2020/8604340
中图分类号
Q81 [生物工程学(生物技术)]; Q93 [微生物学];
学科分类号
071005 ; 0836 ; 090102 ; 100705 ;
摘要
Pancreatic cancer (PC) is one of the most malignant tumors. Despite considerable progress in the treatment of PC, the prognosis of patients with PC is poor. The aim of this study was to identify potential biomarkers for the diagnosis and prognosis of PC. First, the original data of three independent mRNA expression datasets were downloaded from the Gene Expression Omnibus and The Cancer Genome Atlas databases and screened for differentially expressed genes (DEGs) using the R software. Subsequently, Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes pathway enrichment analyses of the DEGs were performed, and a protein-protein interaction (PPI) network was constructed to screen for hub genes. The hub genes were analyzed for genetic variations, as well as for survival, prognostic, and diagnostic value, using the cBioPortal and Gene Expression Profiling Interactive Analysis (GEPIA) databases and the pROC package. After screening for potential biomarkers, the mRNA and protein levels of the biomarkers were verified at the tissue and cellular levels using the Cancer Cell Line Encyclopedia, GEPIA, and the Human Protein Atlas. As a result, a total of 248 DEGs were identified. The GO terms enriched in DEGs were related to the separation of mitotic sister chromatids and the binding of the spindle to the extracellular matrix. The enriched pathways were associated with focal adhesion, ECM-receptor interaction, and phosphatidylinositol 3-kinase (PI3K)/AKT signaling. The top 20 genes were selected from the PPI network as hub genes, and based on the analysis of multiple databases, MCM2 and NUSAP1 were identified as potential biomarkers for the diagnosis and prognosis of PC. In conclusion, our results show that MCM2 and NUSAP1 can be used as potential biomarkers for the diagnosis and prognosis of PC. The study also provides new insights into the underlying molecular mechanisms of PC.
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页数:20
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共 78 条
[1]  
Badea L, 2008, HEPATO-GASTROENTEROL, V55, P2016
[2]   The clinical utility of serum CA 19-9 in the diagnosis, prognosis and management of pancreatic adenocarcinoma: An evidence based appraisal [J].
Ballehaninna, Umashankar K. ;
Chamberlain, Ronald S. .
JOURNAL OF GASTROINTESTINAL ONCOLOGY, 2012, 3 (02) :105-119
[3]   The Cancer Cell Line Encyclopedia enables predictive modelling of anticancer drug sensitivity [J].
Barretina, Jordi ;
Caponigro, Giordano ;
Stransky, Nicolas ;
Venkatesan, Kavitha ;
Margolin, Adam A. ;
Kim, Sungjoon ;
Wilson, Christopher J. ;
Lehar, Joseph ;
Kryukov, Gregory V. ;
Sonkin, Dmitriy ;
Reddy, Anupama ;
Liu, Manway ;
Murray, Lauren ;
Berger, Michael F. ;
Monahan, John E. ;
Morais, Paula ;
Meltzer, Jodi ;
Korejwa, Adam ;
Jane-Valbuena, Judit ;
Mapa, Felipa A. ;
Thibault, Joseph ;
Bric-Furlong, Eva ;
Raman, Pichai ;
Shipway, Aaron ;
Engels, Ingo H. ;
Cheng, Jill ;
Yu, Guoying K. ;
Yu, Jianjun ;
Aspesi, Peter, Jr. ;
de Silva, Melanie ;
Jagtap, Kalpana ;
Jones, Michael D. ;
Wang, Li ;
Hatton, Charles ;
Palescandolo, Emanuele ;
Gupta, Supriya ;
Mahan, Scott ;
Sougnez, Carrie ;
Onofrio, Robert C. ;
Liefeld, Ted ;
MacConaill, Laura ;
Winckler, Wendy ;
Reich, Michael ;
Li, Nanxin ;
Mesirov, Jill P. ;
Gabriel, Stacey B. ;
Getz, Gad ;
Ardlie, Kristin ;
Chan, Vivien ;
Myer, Vic E. .
NATURE, 2012, 483 (7391) :603-607
[4]   NCBI GEO: archive for functional genomics data sets-update [J].
Barrett, Tanya ;
Wilhite, Stephen E. ;
Ledoux, Pierre ;
Evangelista, Carlos ;
Kim, Irene F. ;
Tomashevsky, Maxim ;
Marshall, Kimberly A. ;
Phillippy, Katherine H. ;
Sherman, Patti M. ;
Holko, Michelle ;
Yefanov, Andrey ;
Lee, Hyeseung ;
Zhang, Naigong ;
Robertson, Cynthia L. ;
Serova, Nadezhda ;
Davis, Sean ;
Soboleva, Alexandra .
NUCLEIC ACIDS RESEARCH, 2013, 41 (D1) :D991-D995
[5]   FOXM1 promotes proliferation in human hepatocellular carcinoma cells by transcriptional activation of CCNB1 [J].
Chai, Na ;
Xie, Hua-hong ;
Yin, Ji-peng ;
Sa, Ke-di ;
Guo, Yi ;
Wang, Meng ;
Liu, Jun ;
Zhang, Xiao-fang ;
Zhang, Xiang ;
Yin, Hong ;
Nie, Yong-zhan ;
Wu, Kai-chun ;
Yang, An-gang ;
Zhang, Rui .
BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS, 2018, 500 (04) :924-929
[6]   CDKN3 expression is an independent prognostic factor and associated with advanced tumor stage in nasopharyngeal carcinoma [J].
Chang, Shih-Lun ;
Chen, Tzu-Ju ;
Lee, Ying-En ;
Lee, Sung-Wei ;
Lin, Li-Ching ;
He, Hong-Lin .
INTERNATIONAL JOURNAL OF MEDICAL SCIENCES, 2018, 15 (10) :992-998
[7]   High Levels of Nucleolar Spindle-Associated Protein and Reduced Levels of BRCA1 Expression Predict Poor Prognosis in Triple-Negative Breast Cancer [J].
Chen, Li ;
Yang, Liu ;
Qiao, Feng ;
Hu, Xin ;
Li, Shan ;
Yao, Ling ;
Yang, Xue-Li ;
Shao, Zhi-Ming .
PLOS ONE, 2015, 10 (10)
[8]   Targeting DTL induces cell cycle arrest and senescence and suppresses cell growth and colony formation through TPX2 inhibition in human hepatocellular carcinoma cells [J].
Chen, Yu-Chia ;
Chen, I-shu ;
Huang, Guan-Jin ;
Kang, Chi-hsiang ;
Wang, Kuo-Chiang ;
Tsao, Min-Jen ;
Pan, Hung-Wei .
ONCOTARGETS AND THERAPY, 2018, 11 :1601-1616
[9]   cytoHubba: identifying hub objects and sub-networks from complex interactome [J].
Chin, Chia-Hao ;
Chen, Shu-Hwa ;
Wu, Hsin-Hung ;
Ho, Chin-Wen ;
Ko, Ming-Tat ;
Lin, Chung-Yen .
BMC SYSTEMS BIOLOGY, 2014, 8
[10]   The need for effective pancreatic cancer detection and management: a biomarker-based strategy [J].
Crawley, Aoife S. ;
O'Kennedy, Richard J. .
EXPERT REVIEW OF MOLECULAR DIAGNOSTICS, 2015, 15 (10) :1339-1353