Frequency-dependent force fields for QMMM calculations

被引:11
作者
Harczuk, Ignat [1 ]
Vahtras, Olav [1 ]
Agren, Hans [1 ]
机构
[1] KTH Royal Inst Technol, Sch Biotechnol, Div Theoret Chem & Biol, SE-10691 Stockholm, Sweden
关键词
THEORY/MOLECULAR MECHANICS APPROACH; DENSITY-FUNCTIONAL THEORY; LIQUID WATER; POTENTIAL FUNCTIONS; MODEL; POLARIZATION; ENVIRONMENTS; MOLECULES; DISCRETE; SYSTEMS;
D O I
10.1039/c4cp05411c
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
We outline the construction of frequency-dependent polarizable force fields. The force fields are derived from analytic response theory for different frequencies using a generalization of the LoProp algorithm giving a decomposition of a molecular dynamical polarizability to localized atomic dynamical polarizabilities. These force fields can enter in a variety of applications - we focus on two such applications in this work: firstly, they can be incorporated in a physical, straightforward, way for current existing methods that use polarizable embeddings, and we can show, for the first time, the effect of the frequency dispersion within the classical environment of a quantum mechanics-molecular mechanics (QMMM) method. Our methodology is here evaluated for some test cases comprising water clusters and organic residues. Secondly, together with a modified Silberstein-Applequist procedure for interacting inducible point-dipoles, these frequency-dependent polarizable force fields can be used for a classical determination of frequency-dependent cluster polarizabilities. We evaluate this methodology by comparing with the corresponding results obtained from quantum mechanics or QMMM where the absolute mean (alpha) over bar is determined with respect to the size of the QM and MM parts of the total system.
引用
收藏
页码:7800 / 7812
页数:13
相关论文
共 38 条
[1]   Solvent effects on NMR isotropic shielding constants.: A comparison between explicit polarizable discrete and continuum approaches [J].
Aidas, Kestutis ;
Mogelhoj, Andreas ;
Kjaer, Hanna ;
Nielsen, Christian B. ;
Mikkelsen, Kurt V. ;
Ruud, Kenneth ;
Christiansen, Ove ;
Kongsted, Jacob .
JOURNAL OF PHYSICAL CHEMISTRY A, 2007, 111 (20) :4199-4210
[2]   On the performance of quantum chemical methods to predict solvatochromic effects:: The case of acrolein in aqueous solution [J].
Aidas, Kestutis ;
Mogelhoj, Andreas ;
Nilsson, Elna J. K. ;
Johnson, Matthew S. ;
Mikkelsen, Kurt V. ;
Christiansen, Ove ;
Soderhjelm, Par ;
Kongsted, Jacob .
JOURNAL OF CHEMICAL PHYSICS, 2008, 128 (19)
[3]  
[Anonymous], 2014, WILEY INTERDISCIP RE, V4, P269
[5]  
Case DA., 2014, AMBER14
[6]   Computational Protocols for Prediction of Solute NMR Relative Chemical Shifts. A Case Study of L-Tryptophan in Aqueous Solution [J].
Eriksen, Janus J. ;
Olsen, Jogvan Magnus H. ;
Aidas, Kestutis ;
Agren, Hans ;
Mikkelsen, Kurt V. ;
Kongsted, Jacob .
JOURNAL OF COMPUTATIONAL CHEMISTRY, 2011, 32 (13) :2853-2864
[7]   Local properties of quantum chemical systems:: The LoProp approach [J].
Gagliardi, L ;
Lindh, R ;
Karlström, G .
JOURNAL OF CHEMICAL PHYSICS, 2004, 121 (10) :4494-4500
[8]   Frequency-dependent polarizabilities of amino acids as calculated by an electrostatic interaction model [J].
Hansen, T ;
Jensen, L ;
Åstrand, PO ;
Mikkelsen, KV .
JOURNAL OF CHEMICAL THEORY AND COMPUTATION, 2005, 1 (04) :626-633
[9]   Studies of pH-Sensitive Optical Properties of the deGFP1 Green Fluorescent Protein Using a Unique Polarizable Force Field [J].
Harczuk, I. ;
Murugan, N. Arul ;
Vahtras, O. ;
Agren, H. .
JOURNAL OF CHEMICAL THEORY AND COMPUTATION, 2014, 10 (08) :3492-3502
[10]   The multi-configuration self-consistent field method within a polarizable embedded framework [J].
Hedegard, Erik Donovan ;
List, Nanna H. ;
Jensen, Hans Jorgen Aagaard ;
Kongsted, Jacob .
JOURNAL OF CHEMICAL PHYSICS, 2013, 139 (04)