A redox-based electrogenetic CRISPR system to connect with and control biological information networks

被引:53
作者
Bhokisham, Narendranath [1 ,2 ]
VanArsdale, Eric [2 ,3 ,4 ]
Stephens, Kristina T. [2 ,3 ,4 ]
Hauk, Pricila [2 ]
Payne, Gregory F. [2 ,3 ,4 ]
Bentley, William E. [2 ,3 ,4 ]
机构
[1] Univ Maryland, Coll Comp Math & Nat Sci, Biol Sci Grad Program, 4066 Campus Dr, College Pk, MD 20742 USA
[2] Univ Maryland, Inst Biosci & Biotechnol Res, 5115 Plant Sci Bldg, College Pk, MD 20742 USA
[3] Univ Maryland, Fischell Dept Bioengn, A James Clark Hall, College Pk, MD 20742 USA
[4] Univ Maryland, Robert E Fischell Inst Biomed Devices, Room 5102,A James Clark Hall, College Pk, MD 20742 USA
基金
美国国家科学基金会; 美国国家卫生研究院;
关键词
ESCHERICHIA-COLI; GENE-EXPRESSION; RNA INTERFERENCE; DOWN-REGULATION; ACTIVATION; CIRCUIT; NOISE; LOCALIZATION; REPRESSION; GENERATION;
D O I
10.1038/s41467-020-16249-x
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
Electronic information can be transmitted to cells directly from microelectronics via electrode-activated redox mediators. These transmissions are decoded by redox-responsive promoters which enable user-specified control over biological function. Here, we build on this redox communication modality by establishing an electronic eCRISPR conduit of information exchange. This system acts as a biological signal processor, amplifying signal reception and filtering biological noise. We electronically amplify bacterial quorum sensing (QS) signaling by activating LasI, the autoinducer-1 synthase. Similarly, we filter out unintended noise by inhibiting the native SoxRS-mediated oxidative stress response regulon. We then construct an eCRISPR based redox conduit in both E. coli and Salmonella enterica. Finally, we display eCRISPR based information processing that allows transmission of spatiotemporal redox commands which are then decoded by gelatin-encapsulated E. coli. We anticipate that redox communication channels will enable biohybrid microelectronic devices that could transform our abilities to electronically interpret and control biological function. Redox-responsive transcriptional regulators can enable user-specified electronic control over biological functions. Here the authors demonstrate electronic control of CRISPRa and CRISPRi using redox signalling.
引用
收藏
页数:12
相关论文
共 72 条
  • [1] The Next Generation of Synthetic Biology Chassis: Moving Synthetic Biology from the Laboratory to the Field
    Adams, Bryn L.
    [J]. ACS SYNTHETIC BIOLOGY, 2016, 5 (12): : 1328 - 1330
  • [2] Modular construction of multi-subunit protein complexes using engineered tags and microbial transglutaminase
    Bhokisham, Narendranath
    Pakhchanian, Haig
    Quan, David
    Tschirhart, Tanya
    Tsao, Chen-Yu
    Payne, Gregory F.
    Bentley, William E.
    [J]. METABOLIC ENGINEERING, 2016, 38 : 1 - 9
  • [3] Programmable repression and activation of bacterial gene expression using an engineered CRISPR-Cas system
    Bikard, David
    Jiang, Wenyan
    Samai, Poulami
    Hochschild, Ann
    Zhang, Feng
    Marraffini, Luciano A.
    [J]. NUCLEIC ACIDS RESEARCH, 2013, 41 (15) : 7429 - 7437
  • [4] The MerR family of transcriptional regulators
    Brown, NL
    Stoyanov, JV
    Kidd, SP
    Hobman, JL
    [J]. FEMS MICROBIOLOGY REVIEWS, 2003, 27 (2-3) : 145 - 163
  • [5] Redox Control of Inflammation in Macrophages
    Bruene, Bernhard
    Dehne, Nathalie
    Grossmann, Nina
    Jung, Michaela
    Namgaladze, Dmitry
    Schmid, Tobias
    von Knethen, Andreas
    Weigert, Andreas
    [J]. ANTIOXIDANTS & REDOX SIGNALING, 2013, 19 (06) : 595 - 637
  • [6] LOV-based reporters for fluorescence imaging
    Buckley, Anthony M.
    Petersen, Jan
    Roe, Andrew J.
    Douce, Gillian R.
    Christie, John M.
    [J]. CURRENT OPINION IN CHEMICAL BIOLOGY, 2015, 27 : 39 - 45
  • [7] Chavez A, 2015, NAT METHODS, V12, P326, DOI [10.1038/NMETH.3312, 10.1038/nmeth.3312]
  • [8] Biocompatible multi-address 3D cell assembly in microfluidic devices using spatially programmable gel formation
    Cheng, Yi
    Luo, Xiaolong
    Tsao, Chen-Yu
    Wu, Hsuan-Chen
    Betz, Jordan
    Payne, Gregory F.
    Bentley, William E.
    Rubloff, Gary W.
    [J]. LAB ON A CHIP, 2011, 11 (14) : 2316 - 2318
  • [9] Chronic Inflammatory Disorders and Their Redox Control: From Molecular Mechanisms to Therapeutic Opportunities
    Chiurchiu, Valerio
    Maccarrone, Mauro
    [J]. ANTIOXIDANTS & REDOX SIGNALING, 2011, 15 (09) : 2605 - 2641
  • [10] Multiplex Genome Engineering Using CRISPR/Cas Systems
    Cong, Le
    Ran, F. Ann
    Cox, David
    Lin, Shuailiang
    Barretto, Robert
    Habib, Naomi
    Hsu, Patrick D.
    Wu, Xuebing
    Jiang, Wenyan
    Marraffini, Luciano A.
    Zhang, Feng
    [J]. SCIENCE, 2013, 339 (6121) : 819 - 823