共 232 条
Structural Insights into tRNA Dynamics on the Ribosome
被引:12
作者:

Agirrezabala, Xabier
论文数: 0 引用数: 0
h-index: 0
机构:
CICbioGUNE Biscay Technol Pk, Struct Biol Unit, Derio 48610, Basque Country, Spain CICbioGUNE Biscay Technol Pk, Struct Biol Unit, Derio 48610, Basque Country, Spain

Valle, Mikel
论文数: 0 引用数: 0
h-index: 0
机构:
CICbioGUNE Biscay Technol Pk, Struct Biol Unit, Derio 48610, Basque Country, Spain CICbioGUNE Biscay Technol Pk, Struct Biol Unit, Derio 48610, Basque Country, Spain
机构:
[1] CICbioGUNE Biscay Technol Pk, Struct Biol Unit, Derio 48610, Basque Country, Spain
关键词:
ribosome;
tRNA dynamics;
protein synthesis;
structure;
conformational landscape;
AMINOACYL-TRANSFER-RNA;
ELONGATION-FACTOR TU;
PHENYLALANINE TRANSFER-RNA;
EUKARYOTIC TRANSLATION INITIATION;
FACTORS EF-G;
MESSENGER-RNA;
GTP HYDROLYSIS;
PROTEIN-SYNTHESIS;
ESCHERICHIA-COLI;
CRYO-EM;
D O I:
10.3390/ijms16059866
中图分类号:
Q5 [生物化学];
Q7 [分子生物学];
学科分类号:
071010 ;
081704 ;
摘要:
High-resolution structures at different stages, as well as biochemical, single molecule and computational approaches have highlighted the elasticity of tRNA molecules when bound to the ribosome. It is well acknowledged that the inherent structural flexibility of the tRNA lies at the heart of the protein synthesis process. Here, we review the recent advances and describe considerations that the conformational changes of the tRNA molecules offer about the mechanisms grounded in translation.
引用
收藏
页码:9866 / 9895
页数:30
相关论文
共 232 条
[21]
tRNAs: Cellular barcodes for amino acids
[J].
Banerjee, Rajat
;
Chen, Shawn
;
Dare, Kiley
;
Gilreath, Marla
;
Praetorius-Ibba, Mette
;
Raina, Medha
;
Reynolds, Noah M.
;
Rogers, Theresa
;
Roy, Herve
;
Yadavalli, Srujana S.
;
Ibba, Michael
.
FEBS LETTERS,
2010, 584 (02)
:387-395

Banerjee, Rajat
论文数: 0 引用数: 0
h-index: 0
机构:
Ohio State Univ, Dept Microbiol, Ctr RNA Biol, Columbus, OH 43210 USA Ohio State Univ, Dept Microbiol, Ctr RNA Biol, Columbus, OH 43210 USA

Chen, Shawn
论文数: 0 引用数: 0
h-index: 0
机构:
Ohio Univ, Mol & Cellular Biol Program, Athens, OH 45701 USA
Ohio Univ, Dept Biol Sci, Athens, OH 45701 USA Ohio State Univ, Dept Microbiol, Ctr RNA Biol, Columbus, OH 43210 USA

Dare, Kiley
论文数: 0 引用数: 0
h-index: 0
机构:
Ohio State Univ, Dept Microbiol, Ctr RNA Biol, Columbus, OH 43210 USA Ohio State Univ, Dept Microbiol, Ctr RNA Biol, Columbus, OH 43210 USA

Gilreath, Marla
论文数: 0 引用数: 0
h-index: 0
机构:
Ohio State Univ, Ohio State Biochem Program, Columbus, OH 43210 USA Ohio State Univ, Dept Microbiol, Ctr RNA Biol, Columbus, OH 43210 USA

Praetorius-Ibba, Mette
论文数: 0 引用数: 0
h-index: 0
机构:
Ohio State Univ, Dept Mol & Cellular Biochem, OSU Comprehens Canc Ctr, Columbus, OH 43210 USA Ohio State Univ, Dept Microbiol, Ctr RNA Biol, Columbus, OH 43210 USA

论文数: 引用数:
h-index:
机构:

Reynolds, Noah M.
论文数: 0 引用数: 0
h-index: 0
机构:
Ohio State Univ, Dept Microbiol, Ctr RNA Biol, Columbus, OH 43210 USA Ohio State Univ, Dept Microbiol, Ctr RNA Biol, Columbus, OH 43210 USA

Rogers, Theresa
论文数: 0 引用数: 0
h-index: 0
机构:
Ohio State Univ, Dept Microbiol, Ctr RNA Biol, Columbus, OH 43210 USA Ohio State Univ, Dept Microbiol, Ctr RNA Biol, Columbus, OH 43210 USA

Roy, Herve
论文数: 0 引用数: 0
h-index: 0
机构:
Ohio State Univ, Dept Microbiol, Ctr RNA Biol, Columbus, OH 43210 USA Ohio State Univ, Dept Microbiol, Ctr RNA Biol, Columbus, OH 43210 USA

Yadavalli, Srujana S.
论文数: 0 引用数: 0
h-index: 0
机构:
Ohio State Univ, Dept Microbiol, Ctr RNA Biol, Columbus, OH 43210 USA Ohio State Univ, Dept Microbiol, Ctr RNA Biol, Columbus, OH 43210 USA

Ibba, Michael
论文数: 0 引用数: 0
h-index: 0
机构:
Ohio State Univ, Dept Microbiol, Ctr RNA Biol, Columbus, OH 43210 USA
Ohio State Univ, Ohio State Biochem Program, Columbus, OH 43210 USA Ohio State Univ, Dept Microbiol, Ctr RNA Biol, Columbus, OH 43210 USA
[22]
The ribosomal peptidyl transferase
[J].
Beringer, Malte
;
Rodnina, Marina V.
.
MOLECULAR CELL,
2007, 26 (03)
:311-321

论文数: 引用数:
h-index:
机构:

Rodnina, Marina V.
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Witten Herdecke, Inst Phys Biochem, D-58448 Witten, Germany Univ Witten Herdecke, Inst Phys Biochem, D-58448 Witten, Germany
[23]
tRNA selection and kinetic proofreading in translation
[J].
Blanchard, SC
;
Gonzalez, RL
;
Kim, HD
;
Chu, S
;
Puglisi, JD
.
NATURE STRUCTURAL & MOLECULAR BIOLOGY,
2004, 11 (10)
:1008-1014

Blanchard, SC
论文数: 0 引用数: 0
h-index: 0
机构: Stanford Univ, Dept Phys & Appl Phys, Stanford, CA 94305 USA

Gonzalez, RL
论文数: 0 引用数: 0
h-index: 0
机构: Stanford Univ, Dept Phys & Appl Phys, Stanford, CA 94305 USA

Kim, HD
论文数: 0 引用数: 0
h-index: 0
机构: Stanford Univ, Dept Phys & Appl Phys, Stanford, CA 94305 USA

Chu, S
论文数: 0 引用数: 0
h-index: 0
机构:
Stanford Univ, Dept Phys & Appl Phys, Stanford, CA 94305 USA Stanford Univ, Dept Phys & Appl Phys, Stanford, CA 94305 USA

Puglisi, JD
论文数: 0 引用数: 0
h-index: 0
机构: Stanford Univ, Dept Phys & Appl Phys, Stanford, CA 94305 USA
[24]
tRNA dynamics on the ribosome during translation
[J].
Blanchard, SC
;
Kim, HD
;
Gonzalez, RL
;
Puglisi, JD
;
Chu, S
.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA,
2004, 101 (35)
:12893-12898

Blanchard, SC
论文数: 0 引用数: 0
h-index: 0
机构: Stanford Univ, Sch Med, Dept Biol Struct, Stanford, CA 94305 USA

Kim, HD
论文数: 0 引用数: 0
h-index: 0
机构: Stanford Univ, Sch Med, Dept Biol Struct, Stanford, CA 94305 USA

Gonzalez, RL
论文数: 0 引用数: 0
h-index: 0
机构: Stanford Univ, Sch Med, Dept Biol Struct, Stanford, CA 94305 USA

Puglisi, JD
论文数: 0 引用数: 0
h-index: 0
机构:
Stanford Univ, Sch Med, Dept Biol Struct, Stanford, CA 94305 USA Stanford Univ, Sch Med, Dept Biol Struct, Stanford, CA 94305 USA

Chu, S
论文数: 0 引用数: 0
h-index: 0
机构: Stanford Univ, Sch Med, Dept Biol Struct, Stanford, CA 94305 USA
[25]
Energy barriers and driving forces in tRNA translocation through the ribosome
[J].
Bock, Lars V.
;
Blau, Christian
;
Schroeder, Gunnar F.
;
Davydov, Iakov I.
;
Fischer, Niels
;
Stark, Holger
;
Rodnina, Marina V.
;
Vaiana, Andrea C.
;
Grubmueller, Helmut
.
NATURE STRUCTURAL & MOLECULAR BIOLOGY,
2013, 20 (12)
:1390-1396

Bock, Lars V.
论文数: 0 引用数: 0
h-index: 0
机构:
Max Planck Inst Biophys Chem, Dept Theoret & Computat Biophys, D-37077 Gottingen, Germany Max Planck Inst Biophys Chem, Dept Theoret & Computat Biophys, D-37077 Gottingen, Germany

Blau, Christian
论文数: 0 引用数: 0
h-index: 0
机构:
Max Planck Inst Biophys Chem, Dept Theoret & Computat Biophys, D-37077 Gottingen, Germany Max Planck Inst Biophys Chem, Dept Theoret & Computat Biophys, D-37077 Gottingen, Germany

Schroeder, Gunnar F.
论文数: 0 引用数: 0
h-index: 0
机构:
Forschungszentrum Julich, Computat Struct Biol Grp, Inst Complex Syst ICS 6, D-52425 Julich, Germany
Univ Dusseldorf, Dept Phys, Dusseldorf, Germany Max Planck Inst Biophys Chem, Dept Theoret & Computat Biophys, D-37077 Gottingen, Germany

Davydov, Iakov I.
论文数: 0 引用数: 0
h-index: 0
机构:
Sci Res Ctr Bioclinicum, Moscow, Russia Max Planck Inst Biophys Chem, Dept Theoret & Computat Biophys, D-37077 Gottingen, Germany

Fischer, Niels
论文数: 0 引用数: 0
h-index: 0
机构:
Max Planck Inst Biophys Chem, Electron Cryomicroscopy Grp 3D, D-37077 Gottingen, Germany Max Planck Inst Biophys Chem, Dept Theoret & Computat Biophys, D-37077 Gottingen, Germany

Stark, Holger
论文数: 0 引用数: 0
h-index: 0
机构:
Max Planck Inst Biophys Chem, Electron Cryomicroscopy Grp 3D, D-37077 Gottingen, Germany
Univ Gottingen, Inst Microbiol & Genet, Dept Mol Electron Cryomicroscopy, D-37073 Gottingen, Germany Max Planck Inst Biophys Chem, Dept Theoret & Computat Biophys, D-37077 Gottingen, Germany

Rodnina, Marina V.
论文数: 0 引用数: 0
h-index: 0
机构:
Max Planck Inst Biophys Chem, Dept Phys Biochem, D-37077 Gottingen, Germany Max Planck Inst Biophys Chem, Dept Theoret & Computat Biophys, D-37077 Gottingen, Germany

Vaiana, Andrea C.
论文数: 0 引用数: 0
h-index: 0
机构:
Max Planck Inst Biophys Chem, Dept Theoret & Computat Biophys, D-37077 Gottingen, Germany Max Planck Inst Biophys Chem, Dept Theoret & Computat Biophys, D-37077 Gottingen, Germany

Grubmueller, Helmut
论文数: 0 引用数: 0
h-index: 0
机构:
Max Planck Inst Biophys Chem, Dept Theoret & Computat Biophys, D-37077 Gottingen, Germany Max Planck Inst Biophys Chem, Dept Theoret & Computat Biophys, D-37077 Gottingen, Germany
[26]
TRANSLOCATION IN PROTEIN SYNTHESIS - A HYBRID STRUCTURE MODEL
[J].
BRETSCHER, MS
.
NATURE,
1968, 218 (5142)
:675-+

BRETSCHER, MS
论文数: 0 引用数: 0
h-index: 0
[27]
Structure of the ribosome with elongation factor G trapped in the pretranslocation state
[J].
Brilot, Axel F.
;
Korostelev, Andrei A.
;
Ermolenko, Dmitri N.
;
Grigorieff, Nikolaus
.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA,
2013, 110 (52)
:20994-20999

Brilot, Axel F.
论文数: 0 引用数: 0
h-index: 0
机构:
Brandeis Univ, Rosenstiel Basic Med Sci Res Ctr, Dept Biochem, Waltham, MA 02454 USA Brandeis Univ, Rosenstiel Basic Med Sci Res Ctr, Dept Biochem, Waltham, MA 02454 USA

Korostelev, Andrei A.
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Massachusetts, Sch Med, Dept Biochem & Mol Pharmacol, RNA Therapeut Inst, Worcester, MA 01605 USA Brandeis Univ, Rosenstiel Basic Med Sci Res Ctr, Dept Biochem, Waltham, MA 02454 USA

Ermolenko, Dmitri N.
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Rochester, Sch Med & Dent, Dept Biochem & Biophys, Rochester, NY 14642 USA
Univ Rochester, Sch Med & Dent, Ctr RNA Biol, Rochester, NY 14642 USA Brandeis Univ, Rosenstiel Basic Med Sci Res Ctr, Dept Biochem, Waltham, MA 02454 USA

Grigorieff, Nikolaus
论文数: 0 引用数: 0
h-index: 0
机构:
Brandeis Univ, Rosenstiel Basic Med Sci Res Ctr, Dept Biochem, Waltham, MA 02454 USA
Howard Hughes Med Inst, Ashburn, VA 20147 USA Brandeis Univ, Rosenstiel Basic Med Sci Res Ctr, Dept Biochem, Waltham, MA 02454 USA
[28]
Structure and Dynamics of the Mammalian Ribosomal Pretranslocation Complex
[J].
Budkevich, Tatyana
;
Giesebrecht, Jan
;
Altman, Roger B.
;
Munro, James B.
;
Mielke, Thorsten
;
Nierhaus, Knud H.
;
Blanchard, Scott C.
;
Spahn, Christian M. T.
.
MOLECULAR CELL,
2011, 44 (02)
:214-224

Budkevich, Tatyana
论文数: 0 引用数: 0
h-index: 0
机构:
Charite, Inst Med Phys & Biophys, D-10117 Berlin, Germany
Max Planck Inst Mol Genet, Abt Vingron, AG Ribosomen, D-14195 Berlin, Germany
Inst Mol Biol & Genet, Grp Prot Biosynth, UA-03143 Kiev, Ukraine Charite, Inst Med Phys & Biophys, D-10117 Berlin, Germany

Giesebrecht, Jan
论文数: 0 引用数: 0
h-index: 0
机构:
Charite, Inst Med Phys & Biophys, D-10117 Berlin, Germany Charite, Inst Med Phys & Biophys, D-10117 Berlin, Germany

Altman, Roger B.
论文数: 0 引用数: 0
h-index: 0
机构:
Cornell Univ, Weill Cornell Med Coll, New York, NY 10065 USA Charite, Inst Med Phys & Biophys, D-10117 Berlin, Germany

Munro, James B.
论文数: 0 引用数: 0
h-index: 0
机构:
Cornell Univ, Weill Cornell Med Coll, New York, NY 10065 USA Charite, Inst Med Phys & Biophys, D-10117 Berlin, Germany

Mielke, Thorsten
论文数: 0 引用数: 0
h-index: 0
机构:
Charite, Inst Med Phys & Biophys, D-10117 Berlin, Germany
Max Planck Inst Mol Genet, UltraStrukturNetzwerk, D-14195 Berlin, Germany Charite, Inst Med Phys & Biophys, D-10117 Berlin, Germany

Nierhaus, Knud H.
论文数: 0 引用数: 0
h-index: 0
机构:
Max Planck Inst Mol Genet, Abt Vingron, AG Ribosomen, D-14195 Berlin, Germany Charite, Inst Med Phys & Biophys, D-10117 Berlin, Germany

Blanchard, Scott C.
论文数: 0 引用数: 0
h-index: 0
机构:
Cornell Univ, Weill Cornell Med Coll, New York, NY 10065 USA Charite, Inst Med Phys & Biophys, D-10117 Berlin, Germany

Spahn, Christian M. T.
论文数: 0 引用数: 0
h-index: 0
机构:
Charite, Inst Med Phys & Biophys, D-10117 Berlin, Germany Charite, Inst Med Phys & Biophys, D-10117 Berlin, Germany
[29]
Regulation of the Mammalian Elongation Cycle by Subunit Rolling: A Eukaryotic-Specific Ribosome Rearrangement
[J].
Budkevich, Tatyana V.
;
Giesebrecht, Jan
;
Behrmann, Elmar
;
Loerke, Justus
;
Ramrath, David J. F.
;
Mielke, Thorsten
;
Ismer, Jochen
;
Hildebrand, Peter W.
;
Tung, Chang-Shung
;
Nierhaus, Knud H.
;
Sanbonmatsu, Karissa Y.
;
Spahn, Christian M. T.
.
CELL,
2014, 158 (01)
:121-131

Budkevich, Tatyana V.
论文数: 0 引用数: 0
h-index: 0
机构:
Charite, Inst Med Phys & Biophys, D-10117 Berlin, Germany
Max Planck Inst Mol Genet, Abt Vingron, D-14195 Berlin, Germany
Inst Mol Biol & Genet, Grp Prot Biosynthesis, UA-03143 Kiev, Ukraine Charite, Inst Med Phys & Biophys, D-10117 Berlin, Germany

Giesebrecht, Jan
论文数: 0 引用数: 0
h-index: 0
机构:
Charite, Inst Med Phys & Biophys, D-10117 Berlin, Germany Charite, Inst Med Phys & Biophys, D-10117 Berlin, Germany

Behrmann, Elmar
论文数: 0 引用数: 0
h-index: 0
机构:
Charite, Inst Med Phys & Biophys, D-10117 Berlin, Germany Charite, Inst Med Phys & Biophys, D-10117 Berlin, Germany

Loerke, Justus
论文数: 0 引用数: 0
h-index: 0
机构:
Charite, Inst Med Phys & Biophys, D-10117 Berlin, Germany Charite, Inst Med Phys & Biophys, D-10117 Berlin, Germany

Ramrath, David J. F.
论文数: 0 引用数: 0
h-index: 0
机构:
Charite, Inst Med Phys & Biophys, D-10117 Berlin, Germany Charite, Inst Med Phys & Biophys, D-10117 Berlin, Germany

Mielke, Thorsten
论文数: 0 引用数: 0
h-index: 0
机构:
Charite, Inst Med Phys & Biophys, D-10117 Berlin, Germany
Max Planck Inst Mol Genet, UltraStrukturNetzwerk, D-14195 Berlin, Germany Charite, Inst Med Phys & Biophys, D-10117 Berlin, Germany

Ismer, Jochen
论文数: 0 引用数: 0
h-index: 0
机构:
Charite, Inst Med Phys & Biophys, D-10117 Berlin, Germany Charite, Inst Med Phys & Biophys, D-10117 Berlin, Germany

Hildebrand, Peter W.
论文数: 0 引用数: 0
h-index: 0
机构:
Charite, Inst Med Phys & Biophys, D-10117 Berlin, Germany Charite, Inst Med Phys & Biophys, D-10117 Berlin, Germany

Tung, Chang-Shung
论文数: 0 引用数: 0
h-index: 0
机构:
Los Alamos Natl Lab, Div Theoret, Theoret Biol & Biophys Grp, Los Alamos, NM 87545 USA Charite, Inst Med Phys & Biophys, D-10117 Berlin, Germany

Nierhaus, Knud H.
论文数: 0 引用数: 0
h-index: 0
机构:
Charite, Inst Med Phys & Biophys, D-10117 Berlin, Germany
Max Planck Inst Mol Genet, Abt Vingron, D-14195 Berlin, Germany Charite, Inst Med Phys & Biophys, D-10117 Berlin, Germany

Sanbonmatsu, Karissa Y.
论文数: 0 引用数: 0
h-index: 0
机构:
Los Alamos Natl Lab, Div Theoret, Theoret Biol & Biophys Grp, Los Alamos, NM 87545 USA
New Mexico Consortium, Los Alamos, NM 87544 USA Charite, Inst Med Phys & Biophys, D-10117 Berlin, Germany

Spahn, Christian M. T.
论文数: 0 引用数: 0
h-index: 0
机构:
Charite, Inst Med Phys & Biophys, D-10117 Berlin, Germany Charite, Inst Med Phys & Biophys, D-10117 Berlin, Germany
[30]
Programmed-1 Frameshifting by Kinetic Partitioning during Impeded Translocation
[J].
Caliskan, Neva
;
Katunin, Vladimir I.
;
Belardinelli, Riccardo
;
Peske, Frank
;
Rodnina, Marina V.
.
CELL,
2014, 157 (07)
:1619-1631

Caliskan, Neva
论文数: 0 引用数: 0
h-index: 0
机构:
Max Planck Inst Biophys Chem, Dept Phys Biochem, D-37077 Gottingen, Germany Max Planck Inst Biophys Chem, Dept Phys Biochem, D-37077 Gottingen, Germany

Katunin, Vladimir I.
论文数: 0 引用数: 0
h-index: 0
机构:
BP Konstantinov Petersburg Nucl Phys Inst, Dept Mol & Radiat Biophys, Gatchina 188300, Russia Max Planck Inst Biophys Chem, Dept Phys Biochem, D-37077 Gottingen, Germany

Belardinelli, Riccardo
论文数: 0 引用数: 0
h-index: 0
机构:
Max Planck Inst Biophys Chem, Dept Phys Biochem, D-37077 Gottingen, Germany Max Planck Inst Biophys Chem, Dept Phys Biochem, D-37077 Gottingen, Germany

Peske, Frank
论文数: 0 引用数: 0
h-index: 0
机构:
Max Planck Inst Biophys Chem, Dept Phys Biochem, D-37077 Gottingen, Germany Max Planck Inst Biophys Chem, Dept Phys Biochem, D-37077 Gottingen, Germany

Rodnina, Marina V.
论文数: 0 引用数: 0
h-index: 0
机构:
Max Planck Inst Biophys Chem, Dept Phys Biochem, D-37077 Gottingen, Germany Max Planck Inst Biophys Chem, Dept Phys Biochem, D-37077 Gottingen, Germany