Structural Insights into tRNA Dynamics on the Ribosome

被引:11
作者
Agirrezabala, Xabier [1 ]
Valle, Mikel [1 ]
机构
[1] CICbioGUNE Biscay Technol Pk, Struct Biol Unit, Derio 48610, Basque Country, Spain
来源
INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES | 2015年 / 16卷 / 05期
关键词
ribosome; tRNA dynamics; protein synthesis; structure; conformational landscape; AMINOACYL-TRANSFER-RNA; ELONGATION-FACTOR TU; PHENYLALANINE TRANSFER-RNA; EUKARYOTIC TRANSLATION INITIATION; FACTORS EF-G; MESSENGER-RNA; GTP HYDROLYSIS; PROTEIN-SYNTHESIS; ESCHERICHIA-COLI; CRYO-EM;
D O I
10.3390/ijms16059866
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
High-resolution structures at different stages, as well as biochemical, single molecule and computational approaches have highlighted the elasticity of tRNA molecules when bound to the ribosome. It is well acknowledged that the inherent structural flexibility of the tRNA lies at the heart of the protein synthesis process. Here, we review the recent advances and describe considerations that the conformational changes of the tRNA molecules offer about the mechanisms grounded in translation.
引用
收藏
页码:9866 / 9895
页数:30
相关论文
共 232 条
  • [1] Mechanism of ribosomal subunit joining during eukaryotic translation initiation
    Acker, Michael G.
    Lorsch, Jon R.
    [J]. BIOCHEMICAL SOCIETY TRANSACTIONS, 2008, 36 : 653 - 657
  • [2] Converting structural information into an allosteric-energy-based picture for elongation factor Tu activation by the ribosome
    Adamczyk, Andrew J.
    Warshel, Arieh
    [J]. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2011, 108 (24) : 9827 - 9832
  • [3] Visualization of the Hybrid State of tRNA Binding Promoted by Spontaneous Ratcheting of the Ribosome
    Agirrezabala, Xabier
    Lei, Jianlin
    Brunelle, Julie L.
    Ortiz-Meoz, Rodrigo F.
    Green, Rachel
    Frank, Joachim
    [J]. MOLECULAR CELL, 2008, 32 (02) : 190 - 197
  • [4] The ribosome triggers the stringent response by RelA via a highly distorted tRNA
    Agirrezabala, Xabier
    Fernandez, Israel S.
    Kelley, Ann C.
    Gil Carton, David
    Ramakrishnan, Venki
    Valle, Mikel
    [J]. EMBO REPORTS, 2013, 14 (09) : 811 - 816
  • [5] Structural characterization of mRNA-tRNA translocation intermediates
    Agirrezabala, Xabier
    Liao, Hstau Y.
    Schreiner, Eduard
    Fu, Jie
    Ortiz-Meoz, Rodrigo F.
    Schulten, Klaus
    Green, Rachel
    Frank, Joachim
    [J]. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2012, 109 (16) : 6094 - 6099
  • [6] Structural insights into cognate versus near-cognate discrimination during decoding
    Agirrezabala, Xabier
    Schreiner, Eduard
    Trabuco, Leonardo G.
    Lei, Jianlin
    Ortiz-Meoz, Rodrigo F.
    Schulten, Klaus
    Green, Rachel
    Frank, Joachim
    [J]. EMBO JOURNAL, 2011, 30 (08) : 1497 - 1507
  • [7] Elongation in translation as a dynamic interaction among the ribosome, tRNA, and elongation factors EF-G and EF-Tu
    Agirrezabala, Xabier
    Frank, Joachim
    [J]. QUARTERLY REVIEWS OF BIOPHYSICS, 2009, 42 (03) : 159 - 200
  • [8] A mechanistic overview of translation initiation in eukaryotes
    Aitken, Colin Echeverria
    Lorsch, Jon R.
    [J]. NATURE STRUCTURAL & MOLECULAR BIOLOGY, 2012, 19 (06) : 568 - 576
  • [9] Following the intersubunit conformation of the ribosome during translation in real time
    Aitken, Colin Echeverria
    Puglisi, Joseph D.
    [J]. NATURE STRUCTURAL & MOLECULAR BIOLOGY, 2010, 17 (07) : 793 - U35
  • [10] Single Ribosome Dynamics and the Mechanism of Translation
    Aitken, Colin Echeverria
    Petrov, Alexey
    Puglisi, Joseph D.
    [J]. ANNUAL REVIEW OF BIOPHYSICS, VOL 39, 2010, 39 : 491 - 513