Early Antibody Lineage Diversification and Independent Limb Maturation Lead to Broad HIV-1 Neutralization Targeting the Env High-Mannose Patch

被引:113
作者
MacLeod, Daniel T. [1 ,11 ]
Choi, Nancy M. [1 ,11 ]
Briney, Bryan [1 ,2 ,5 ]
Garces, Fernando [1 ,3 ,4 ,5 ]
Ver, Lorena S. [1 ,11 ]
Landais, Elise [1 ,11 ]
Murrell, Ben [6 ]
Wrin, Terri [7 ]
Kilembe, William [8 ]
Liang, Chi-Hui [2 ]
Ramos, Alejandra [1 ,11 ]
Bian, Chaoran B. [1 ,11 ]
Wickramasinghe, Lalinda [1 ,11 ]
Kong, Leopold [1 ,3 ,4 ,5 ]
Eren, Kemal [6 ]
Wu, Chung-Yi [9 ]
Wong, Chi-Huey [9 ]
Pond, Sergei L. Kosakovsky [6 ]
Wilson, Ian A. [1 ,3 ,4 ,5 ]
Burton, Dennis R. [1 ,2 ,5 ,10 ]
Poignard, Pascal [1 ,2 ,11 ,12 ]
机构
[1] Scripps Res Inst, Int AIDS Vaccine Initiat Neutralizing Antibody Ct, La Jolla, CA 92037 USA
[2] Scripps Res Inst, Dept Immunol & Microbial Sci, La Jolla, CA 92037 USA
[3] Scripps Res Inst, Dept Integrat Struct & Computat Biol, La Jolla, CA 92037 USA
[4] Scripps Res Inst, Skaggs Inst Chem Biol, La Jolla, CA 92037 USA
[5] Scripps Res Inst, Scripps Ctr HIV AIDS Vaccine Immunol & Immunogen, La Jolla, CA 92037 USA
[6] Univ Calif San Diego, Dept Med, La Jolla, CA 92093 USA
[7] Monogram Biosci Inc, San Francisco, CA 94080 USA
[8] Zambia Emory HIV Res Project, Lusaka, Zambia
[9] Acad Sinica, Genom Res Ctr, Taipei 115, Taiwan
[10] Ragon Inst MGH MIT & Harvard, Cambridge, MA 02139 USA
[11] Int AIDS Vaccine Initiat, New York, NY 10038 USA
[12] Univ Grenoble Alpes, CNRS, Inst Biol Struct, CEA, F-38044 Grenoble, France
基金
比尔及梅琳达.盖茨基金会;
关键词
HUMAN MONOCLONAL-ANTIBODIES; VH4-21 GENE SEGMENT; B-CELLS; GLYCAN RECOGNITION; DEPENDENT EPITOPE; COLD AGGLUTININS; POTENT; VULNERABILITY; EVOLUTION; AUTOREACTIVITY;
D O I
10.1016/j.immuni.2016.04.016
中图分类号
R392 [医学免疫学]; Q939.91 [免疫学];
学科分类号
100102 ;
摘要
The high-mannose patch on HIV Env is a preferred target for broadly neutralizing antibodies (bnAbs), but to date, no vaccination regimen has elicited bnAbs against this region. Here, we present the development of a bnAb lineage targeting the high-mannose patch in an HIV-1 subtype-C-infected donor from sub-Saharan Africa. The Abs first acquired autologous neutralization, then gradually matured to achieve breadth. One Ab neutralized >47% of HIV-1 strains with only similar to 11% somatic hypermutation and no insertions or deletions. By sequencing autologous env, we determined key residues that triggered the lineage and participated in Ab-Env coevolution. Next-generation sequencing of the Ab repertoire showed an early expansive diversification of the lineage followed by independent maturation of individual limbs, several of them developing notable breadth and potency. Overall, the findings are encouraging from a vaccine standpoint and suggest immunization strategies mimicking the evolution of the entire high-mannose patch and promoting maturation of multiple diverse Ab pathways.
引用
收藏
页码:1215 / 1226
页数:12
相关论文
共 52 条
  • [1] Therapeutic efficacy of potent neutralizing HIV-1-specific monoclonal antibodies in SHIV-infected rhesus monkeys
    Barouch, Dan H.
    Whitney, James B.
    Moldt, Brian
    Klein, Florian
    Oliveira, Thiago Y.
    Liu, Jinyan
    Stephenson, Kathryn E.
    Chang, Hui-Wen
    Shekhar, Karthik
    Gupta, Sanjana
    Nkolola, Joseph P.
    Seaman, Michael S.
    Smith, Kaitlin M.
    Borducchi, Erica N.
    Cabral, Crystal
    Smith, Jeffrey Y.
    Blackmore, Stephen
    Sanisetty, Srisowmya
    Perry, James R.
    Beck, Matthew
    Lewis, Mark G.
    Rinaldi, William
    Chakraborty, Arup K.
    Poignard, Pascal
    Nussenzweig, Michel C.
    Burton, Dennis R.
    [J]. NATURE, 2013, 503 (7475) : 224 - +
  • [2] Viral variants that initiate and drive maturation of V1V2-directed HIV-1 broadly neutralizing antibodies
    Bhiman, Jinal N.
    Anthony, Colin
    Doria-Rose, Nicole A.
    Karimanzira, Owen
    Schramm, Chaim A.
    Khoza, Thandeka
    Kitchin, Dale
    Botha, Gordon
    Gorman, Jason
    Garrett, Nigel J.
    Karim, Salim S. Abdool
    Shapiro, Lawrence
    Williamson, Carolyn
    Kwong, Peter D.
    Mascola, John R.
    Morris, Lynn
    Moore, Penny L.
    [J]. NATURE MEDICINE, 2015, 21 (11) : 1332 - 1336
  • [3] Structural Delineation of a Quaternary, Cleavage-Dependent Epitope at the gp41-gp120 Interface on Intact HIV-1 Env Trimers
    Blattner, Claudia
    Lee, Jeong Hyun
    Sliepen, Kwinten
    Derking, Ronald
    Falkowska, Emilia
    de la Pena, Alba Torrents
    Cupo, Albert
    Julien, Jean-Philippe
    van Gils, Marit
    Lee, Peter S.
    Peng, Wenjie
    Paulson, James C.
    Poignard, Pascal
    Burton, Dennis R.
    Moore, John P.
    Sanders, Rogier W.
    Wilson, Ian A.
    Ward, Andrew B.
    [J]. IMMUNITY, 2014, 40 (05) : 669 - 680
  • [4] Clonify: unseeded antibody lineage assignment from next-generation sequencing data
    Briney, Bryan
    Le, Khoa
    Zhu, Jiang
    Burton, Dennis R.
    [J]. SCIENTIFIC REPORTS, 2016, 6
  • [5] Human Peripheral Blood Antibodies with Long HCDR3s Are Established Primarily at Original Recombination Using a Limited Subset of Germline Genes
    Briney, Bryan S.
    Willis, Jordan R.
    Crowe, James E., Jr.
    [J]. PLOS ONE, 2012, 7 (05):
  • [6] A Blueprint for HIV Vaccine Discovery
    Burton, Dennis R.
    Ahmed, Rafi
    Barouch, Dan H.
    Butera, Salvatore T.
    Crotty, Shane
    Godzik, Adam
    Kaufmann, Daniel E.
    McElrath, M. Juliana
    Nussenzweig, Michel C.
    Pulendran, Bali
    Scanlan, Chris N.
    Schief, William R.
    Silvestri, Guido
    Streeck, Hendrik
    Walker, Bruce D.
    Walker, Laura M.
    Ward, Andrew B.
    Wilson, Ian A.
    Wyatt, Richard
    [J]. CELL HOST & MICROBE, 2012, 12 (04) : 396 - 407
  • [7] Germinal center exclusion of autoreactive B cells is defective in human systemic lupus erythematosus
    Cappione, A
    Anolik, JH
    Pugh-Bernard, A
    Barnard, J
    Dutcher, P
    Silverman, G
    Sanz, I
    [J]. JOURNAL OF CLINICAL INVESTIGATION, 2005, 115 (11) : 3205 - 3216
  • [8] Variable Loop Glycan Dependency of the Broad and Potent HIV-1-Neutralizing Antibodies PG9 and PG16
    Doores, Katie J.
    Burton, Dennis R.
    [J]. JOURNAL OF VIROLOGY, 2010, 84 (20) : 10510 - 10521
  • [9] Developmental pathway for potent V1V2-directed HIV-neutralizing antibodies
    Doria-Rose, Nicole A.
    Schramm, Chaim A.
    Gorman, Jason
    Moore, Penny L.
    Bhiman, Jinal N.
    DeKosky, Brandon J.
    Ernandes, Michael J.
    Georgiev, Ivelin S.
    Kim, Helen J.
    Pancera, Marie
    Staupe, Ryan P.
    Altae-Tran, Han R.
    Bailer, Robert T.
    Crooks, Ema T.
    Cupo, Albert
    Druz, Aliaksandr
    Garrett, Nigel J.
    Hoi, Kam H.
    Kong, Rui
    Louder, Mark K.
    Longo, Nancy S.
    McKee, Krisha
    Nonyane, Molati
    O'Dell, Sijy
    Roark, Ryan S.
    Rudicell, Rebecca S.
    Schmidt, Stephen D.
    Sheward, Daniel J.
    Soto, Cinque
    Wibmer, Constantinos Kurt
    Yang, Yongping
    Zhang, Zhenhai
    Mullikin, James C.
    Binley, James M.
    Sanders, Rogier W.
    Wilson, Ian A.
    Moore, John P.
    Ward, Andrew B.
    Georgiou, George
    Williamson, Carolyn
    Karim, Salim S. Abdool
    Morris, Lynn
    Kwong, Peter D.
    Shapiro, Lawrence
    Mascola, John R.
    [J]. NATURE, 2014, 509 (7498) : 55 - +
  • [10] Broadly Neutralizing HIV Antibodies Define a Glycan-Dependent Epitope on the Prefusion Conformation of gp41 on Cleaved Envelope Trimers
    Falkowska, Emilia
    Le, Khoa M.
    Ramos, Alejandra
    Doores, Katie J.
    Lee, Jeong Hyun
    Blattner, Claudia
    Ramirez, Alejandro
    Derking, Ronald
    van Gils, Marit J.
    Liang, Chi-Hui
    Mcbride, Ryan
    von Bredow, Benjamin
    Shivatare, Sachin S.
    Wu, Chung-Yi
    Chan-Hui, Po-Ying
    Liu, Yan
    Feizi, Ten
    Zwick, Michael B.
    Koff, Wayne C.
    Seaman, Michael S.
    Swiderek, Kristine
    Moore, John P.
    Evans, David
    Paulson, James C.
    Wong, Chi-Huey
    Ward, Andrew B.
    Wilson, Ian A.
    Sanders, Rogier W.
    Poignard, Pascal
    Burton, Dennis R.
    [J]. IMMUNITY, 2014, 40 (05) : 657 - 668