Computational chromatography: A machine learning strategy for demixing individual chemical components in complex mixtures

被引:24
作者
Bajomo, Mary M. [1 ]
Ju, Yilong [1 ]
Zhou, Jingyi [2 ,4 ]
Elefterescu, Simina [3 ]
Farr, Corbin [1 ,5 ]
Zhao, Yiping [6 ]
Neumann, Oara [2 ]
Nordlander, Peter [2 ,7 ]
Patel, Ankit [8 ]
Halas, Naomi J. [1 ,2 ,9 ]
机构
[1] Rice Univ, Dept Chem, Houston, TX 77005 USA
[2] Rice Univ, Lab Nanophoton, Houston, TX 77005 USA
[3] Rice Univ, Dept Comp Sci, Houston, TX 77005 USA
[4] Rice Univ, Dept Mat Sci & Nanoengn, Houston, TX 77005 USA
[5] Univ Houston, Dept Biochem, Houston, TX 77204 USA
[6] Univ Georgia, Dept Phys & Astron, Athens, GA 30602 USA
[7] Rice Univ, Dept Elect & Comp Engn, Houston, TX 77005 USA
[8] Rice Univ, Dept Phys & Astron, Houston, TX 77005 USA
[9] Baylor Coll Med, Dept Neurosci, Houston, TX 77030 USA
基金
美国国家卫生研究院;
关键词
surface-enhanced Raman scattering; polycyclic aromatic hydrocarbons; machine  learning; nanoparticles; nonnegative matrix factorization; POLYCYCLIC AROMATIC-HYDROCARBONS; ENHANCED RAMAN-SPECTROSCOPY; ALGORITHMS; SERS; SCATTERING;
D O I
10.1073/pnas.2211406119
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
Surface-enhanced Raman spectroscopy (SERS) holds exceptional promise as a stream-lined chemical detection strategy for biological and environmental contaminants com-pared with current laboratory methods. Priority pollutants such as polycyclic aromatic hydrocarbons (PAHs), detectable in water and soil worldwide and known to induce multiple adverse health effects upon human exposure, are typically found in multi -component mixtures. By combining the molecular fingerprinting capabilities of SERS with the signal separation and detection capabilities of machine learning (ML), we examine whether individual PAHs can be identified through an analysis of the SERS spectra of multicomponent PAH mixtures. We have developed an unsupervised ML method we call Characteristic Peak Extraction, a dimensionality reduction algorithm that extracts characteristic SERS peaks based on counts of detected peaks of the mixture. By analyzing the SERS spectra of two-component and four-component PAH mixtures where the concentration ratios of the various components vary, this algorithm is able to extract the spectra of each unknown component in the mixture of unknowns, which is then subsequently identified against a SERS spectral library of PAHs. Combining the molecular fingerprinting capabilities of SERS with the signal separation and detection capabilities of ML, this effort is a step toward the computational demixing of unknown chemical components occurring in complex multicomponent mixtures.
引用
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页数:10
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