Manipulation of enzyme properties by noncanonical amino acid incorporation

被引:29
作者
Zheng, Shun [1 ]
Kwon, Inchan [1 ]
机构
[1] Univ Virginia, Dept Chem Engn, Charlottesville, VA 22904 USA
关键词
Biocatalysis; Enzyme; Noncanonical amino acid; Protein engineering; SITE-SPECIFIC INCORPORATION; GREEN FLUORESCENT PROTEIN; EXPANDED GENETIC-CODE; ALKALINE PHOSPHATASE FORMATION; ACTIVE DNA-POLYMERASE; ESCHERICHIA-COLI K-12; LEUCYL-TRANSFER-RNA; IN-VIVO; RECOMBINANT PROTEINS; BACILLUS-MEGATERIUM;
D O I
10.1002/biot.201100267
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
Since wild-type enzymes do not always have the properties needed for various applications, enzymes are often engineered to obtain desirable properties through protein engineering techniques. In the past decade, complementary to the widely used rational protein design and directed evolution techniques, noncanonical amino acid incorporation (NCAAI) has become a new and effective protein engineering technique. Recently, NCAAI has been used to improve intrinsic functions of proteins, such as enzymes and fluorescent proteins, beyond the capacities obtained with natural amino acids. Herein, recent progress on improving enzyme properties through NCAAI in vivo is reviewed and the challenges of current approaches and future directions are also discussed. To date, both NCAAI methods - residue- and site-specific incorporation - have been primarily used to improve the catalytic turnover number and substrate binding affinity of enzymes. Numerous strategies used to minimize structural perturbation and stability loss of a target enzyme upon NCAAI are also explored. Considering the generality of NCAAI incorporation, we expect its application could be expanded to improve other enzyme properties, such as substrate specificity and solvent resistance in the near future.
引用
收藏
页码:47 / 60
页数:14
相关论文
共 94 条
[1]   Adaptation of an orthogonal archaeal leucyl-tRNA and synthetase pair for four-base, amber, and opal suppression [J].
Anderson, JC ;
Schultz, PG .
BIOCHEMISTRY, 2003, 42 (32) :9598-9608
[2]   Fluorescence resonance energy transfer between unnatural amino acids in a structurally modified dihydrofolate reductase [J].
Anderson, RD ;
Zhou, J ;
Hecht, SM .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2002, 124 (33) :9674-9675
[3]   Structure, catalytic mechanism, and evolution of the glutathione transferases [J].
Armstrong, RN .
CHEMICAL RESEARCH IN TOXICOLOGY, 1997, 10 (01) :2-18
[4]   A facile and efficient method for the incorporation of multiple unnatural amino acids into a single protein [J].
Ayyadurai, Niraikulam ;
Deepankumar, Kanagavel ;
Prabhu, Nadarajan Saravanan ;
Lee, Sungu ;
Yun, Hyungdon .
CHEMICAL COMMUNICATIONS, 2011, 47 (12) :3430-3432
[5]   Expansion of the genetic code enables design of a novel "gold'' class of green fluorescent proteins [J].
Bae, JH ;
Rubini, M ;
Jung, G ;
Wiegand, G ;
Seifert, MHJ ;
Azim, MK ;
Kim, JS ;
Zumbusch, A ;
Holak, TA ;
Moroder, L ;
Huber, R ;
Budisa, N .
JOURNAL OF MOLECULAR BIOLOGY, 2003, 328 (05) :1071-1081
[6]   Incorporation of β-selenolo[3,2-b]pyrrolyl-alanine into proteins for phase determination in protein X-ray crystallography [J].
Bae, JH ;
Alefelder, S ;
Kaiser, JT ;
Friedrich, R ;
Moroder, L ;
Huber, R ;
Budisa, N .
JOURNAL OF MOLECULAR BIOLOGY, 2001, 309 (04) :925-936
[7]   Incorporation of an unnatural amino acid in the active site of porcine pancreatic phospholipase A(2). Substitution of histidine by 1,2,4-triazole-3-alanine yields an enzyme with high activity at acidic pH [J].
Beiboer, SHW ;
vandenBerg, B ;
Dekker, N ;
Cox, RC ;
Verheij, HM .
PROTEIN ENGINEERING, 1996, 9 (04) :345-352
[8]   Evolution of amino acid frequencies in proteins over deep time: Inferred order of introduction of amino acids into the genetic code [J].
Brooks, DJ ;
Fresco, JR ;
Lesk, AM ;
Singh, M .
MOLECULAR BIOLOGY AND EVOLUTION, 2002, 19 (10) :1645-1655
[9]  
Budisa N, 2006, ENGINEERING THE GENETIC CODE: EXPANDING THE AMINO ACID REPERTOIRE FOR THE DESIGN OF NOVEL PROTEINS, P1
[10]   Prolegomena to future experimental efforts on genetic code engineering by expanding its amino acid repertoire [J].
Budisa, N .
ANGEWANDTE CHEMIE-INTERNATIONAL EDITION, 2004, 43 (47) :6426-6463