The precious fluorine on the ring: fluorine NMR for biological systems

被引:38
作者
Boeszoermenyi, Andras [1 ,2 ]
Ogorek, Barbara [3 ,4 ]
Jain, Akshay [1 ]
Arthanari, Haribabu [1 ,2 ]
Wagner, Gerhard [2 ]
机构
[1] Dana Farber Canc Inst, Dept Canc Biol, 450 Brookline Ave, Boston, MA 02215 USA
[2] Harvard Med Sch, Dept Biol Chem & Mol Pharmacol, 240 Longwood Ave, Boston, MA 02115 USA
[3] Brigham & Womens Hosp, Dept Med, Pulm & Crit Care Med, 75 Francis St, Boston, MA 02115 USA
[4] Harvard Med Sch, Boston, MA 02115 USA
基金
奥地利科学基金会;
关键词
Fluorine NMR; TROSY; Nucleic acids; Proteins; Drug discovery; 4-fluorophenylalanine; BOVINE SERUM-ALBUMIN; LABELED AMINO-ACIDS; F-19; NMR; PROTEIN-STRUCTURE; ESCHERICHIA-COLI; BINDING DOMAIN; IN-VITRO; RNA; SPECTROSCOPY; DYNAMICS;
D O I
10.1007/s10858-020-00331-z
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
The fluorine-19 nucleus was recognized early to harbor exceptional properties for NMR spectroscopy. With 100% natural abundance, a high gyromagnetic ratio (83% sensitivity compared to(1)H), a chemical shift that is extremely sensitive to its surroundings and near total absence in biological systems, it was destined to become a favored NMR probe, decorating small and large molecules. However, after early excitement, where uptake of fluorinated aromatic amino acids was explored in a series of animal studies,F-19-NMR lost popularity, especially in large molecular weight systems, due to chemical shift anisotropy (CSA) induced line broadening at high magnetic fields. Recently, two orthogonal approaches, (i) CF(3)labeling and (ii) aromatic(19)F-C-13 labeling leveraging the TROSY (Transverse Relaxation Optimized Spectroscopy) effect have been successfully applied to study large biomolecular systems. In this perspective, we will discuss the fascinating early work with fluorinated aromatic amino acids, which reveals the enormous potential of these non-natural amino acids in biological NMR and the potential of(19)F-NMR to characterize protein and nucleic acid structure, function and dynamics in the light of recent developments. Finally, we explore how fluorine NMR might be exploited to implement small molecule or fragment screens that resemble physiological conditions and discuss the opportunity to follow the fate of small molecules in living cells.
引用
收藏
页码:365 / 379
页数:15
相关论文
共 121 条
[21]   Sensitivity improvement in 19F NMR-based screening experiments:: Theoretical considerations and experimental applications [J].
Dalvit, C ;
Mongelli, N ;
Papeo, G ;
Giordano, P ;
Veronesi, M ;
Moskau, D ;
Kümmerle, R .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2005, 127 (38) :13380-13385
[22]   Rapid NMR-based functional screening and IC50 measurements performed at unprecedentedly low enzyme concentration [J].
Dalvit, C ;
Papeo, G ;
Mongelli, N ;
Giordano, P ;
Saccardo, B ;
Costa, A ;
Veronesi, M ;
Ko, SY .
DRUG DEVELOPMENT RESEARCH, 2005, 64 (02) :105-113
[23]   A general NMR method for rapid, efficient, and reliable biochemical screening [J].
Dalvit, C ;
Ardini, E ;
Flocco, M ;
Fogliatto, GP ;
Mongelli, N ;
Veronesi, M .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2003, 125 (47) :14620-14625
[24]   Fluorine NMR functional screening: from purified enzymes to human intact living cells [J].
Dalvit, Claudio ;
Veronesi, Marina ;
Vulpetti, Anna .
JOURNAL OF BIOMOLECULAR NMR, 2020, 74 (10-11) :613-631
[25]   Ligand-Based Fluorine NMR Screening: Principles and Applications in Drug Discovery Projects [J].
Dalvit, Claudio ;
Vulpetti, Anna .
JOURNAL OF MEDICINAL CHEMISTRY, 2019, 62 (05) :2218-2244
[26]   Use of F-19 NMR to probe protein structure and conformational changes [J].
Danielson, MA ;
Falke, JJ .
ANNUAL REVIEW OF BIOPHYSICS AND BIOMOLECULAR STRUCTURE, 1996, 25 :163-195
[27]   SAR by (Protein-Observed) 19F NMR [J].
Divakaran, Anand ;
Kirberger, Steven E. ;
Pomerantz, William C. K. .
ACCOUNTS OF CHEMICAL RESEARCH, 2019, 52 (12) :3407-3418
[28]   Solid state 19F NMR parameters of fluorine-labeled amino acids.: Part I:: Aromatic substituents [J].
Duerr, Ulrich H. N. ;
Grage, Stephan L. ;
Witter, Raiker ;
Ulrich, Anne S. .
JOURNAL OF MAGNETIC RESONANCE, 2008, 191 (01) :7-15
[29]   Production of isotope-labeled proteins in insect cells for NMR [J].
Franke, Bastian ;
Opitz, Christian ;
Isogai, Shin ;
Grahl, Anne ;
Delgado, Leonildo ;
Gossert, Alvar D. ;
Grzesiek, Stephan .
JOURNAL OF BIOMOLECULAR NMR, 2018, 71 (03) :173-184
[30]   UPTAKE OF C14-PARA-FLUOROPHENYLALANINE IN TISSUES OF MICE [J].
GARZO, T ;
HANSSON, E ;
ULLBERG, S .
EXPERIENTIA, 1962, 18 (01) :43-&