Epigenome association study for DNA methylation biomarkers in buccal and monocyte cells for female rheumatoid arthritis

被引:12
作者
Craig, Gary [1 ]
Kenney, Howard [1 ]
Nilsson, Eric E. [2 ]
Sadler-Riggleman, Ingrid [2 ]
Beck, Daniel [2 ]
Skinner, Michael K. [2 ]
机构
[1] Arthrit Northwest, 105 W 8th Ave 6080, Spokane, WA 99204 USA
[2] Washington State Univ, Ctr Reprod Biol, Sch Biol Sci, Pullman, WA 99164 USA
关键词
ALCOHOL-CONSUMPTION; RISK; EPIGENETICS; WOMEN;
D O I
10.1038/s41598-021-03170-6
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
Genetics (i.e., mutations) has been assumed to be the major factor in rheumatoid arthritis (RA) etiology, but accounts for a minority of the variance in disease risk for RA. In contrast to genetics, the environment can have dramatic impacts on epigenetics that associate with disease etiology. The current study used buccal cells and purified blood monocytes from two different clinical cohorts involving Caucasian or African American female populations with or without arthritis. The differential DNA methylation regions (DMRs) between the control and RA populations were identified with an epigenome-wide association study. The DMRs (i.e., epimutations) identified in the buccal cells and monocytes were found to be distinct. The DMR associated genes were identified and many have previously been shown to be associated with arthritis. Observations demonstrate DNA methylation epimutation RA biomarkers are cell type specific and similar findings were observed with the two racial background populations. Rheumatoid arthritis susceptibility epigenetic diagnosis appears feasible and may improve the clinical management of RA and allowpreventative medicine considerations.
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页数:15
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共 61 条
[1]   Whole Blood Targeted Bisulfite Sequencing and Differential Methylation in the C6ORF10 Gene of Patients with Rheumatoid Arthritis [J].
Anaparti, Vidyanand ;
Agarwal, Prasoon ;
Smolik, Irene ;
Mookherjee, Neeloffer ;
El-Gabalawy, Hani .
JOURNAL OF RHEUMATOLOGY, 2020, 47 (11) :1614-1623
[2]   Epigenetic transgenerational actions of endocrine disruptors and mate fertility [J].
Anway, MD ;
Cupp, AS ;
Uzumcu, M ;
Skinner, MK .
SCIENCE, 2005, 308 (5727) :1466-1469
[3]   Smoking, low formal level of education, alcohol consumption, and the risk of rheumatoid arthritis [J].
Bergstrom, U. ;
Jacobsson, L. T. H. ;
Nilsson, J-A ;
Wirfalt, E. ;
Turesson, C. .
SCANDINAVIAN JOURNAL OF RHEUMATOLOGY, 2013, 42 (02) :123-130
[4]   Genomic imprinting analyses identify maternal effects as a cause of phenotypic variability in type 1 diabetes and rheumatoid arthritis [J].
Blunk, Inga ;
Thomsen, Hauke ;
Reinsch, Norbert ;
Mayer, Manfred ;
Foersti, Asta ;
Sundquist, Jan ;
Sundquist, Kristina ;
Hemminki, Kari .
SCIENTIFIC REPORTS, 2020, 10 (01)
[5]   Understanding the Relevance of DNA Methylation Changes in Immune Differentiation and Disease [J].
Calle-Fabregat, Carlos de la ;
Morante-Palacios, Octavio ;
Ballestar, Esteban .
GENES, 2020, 11 (01)
[6]   The road to rheumatoid arthritis prevention: challenges and opportunities [J].
Chaichian, Yashaar ;
Genovese, Mark C. ;
Weisman, Michael H. .
CLINICAL RHEUMATOLOGY, 2020, 39 (05) :1379-1381
[7]   Genome-Wide DNA Methylation Profiles Reveal Common Epigenetic Patterns of Interferon-Related Genes in Multiple Autoimmune Diseases [J].
Chen, Sidi ;
Pu, Weilin ;
Guo, Shicheng ;
Jin, Li ;
He, Dongyi ;
Wang, Jiucun .
FRONTIERS IN GENETICS, 2019, 10
[8]   DNA Methylation as a Future Therapeutic and Diagnostic Target in Rheumatoid Arthritis [J].
Ciechomska, Marzena ;
Roszkowski, Leszek ;
Maslinski, Wlodzimierz .
CELLS, 2019, 8 (09)
[9]   Racial and ethnic representation in epigenomic studies of preterm birth: a systematic review [J].
Collier, Ai-Ris Y. ;
Ledyard, Rachel ;
Montoya-Williams, Diana ;
Qiu, Maylene ;
Dereix, Alexandra E. ;
Farrokhi, Minou Raschid ;
Hacker, Michele R. ;
Burris, Heather H. .
EPIGENOMICS, 2020, 13 (21) :1735-1746
[10]   Origin and function of synovial macrophage subsets during inflammatory joint disease [J].
Culemann, Stephan ;
Grueneboom, Anika ;
Kroenke, Gerhard .
ADVANCES IN IMMUNOLOGY, VOL 143, 2019, 143 :75-98